miRNA display CGI


Results 81 - 100 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 136051 0.69 0.753606
Target:  5'- -cGAGGGGCAgaGagUACUCccccAGCCCCg -3'
miRNA:   3'- gaUUCCCCGUgaCggGUGAG----UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 50667 0.69 0.760204
Target:  5'- -cGGGGGGCcugaccuucuaccuGCUGCCCG--UGACCCUg -3'
miRNA:   3'- gaUUCCCCG--------------UGACGGGUgaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 49748 0.69 0.763017
Target:  5'- --uAGGGGCACcgUGCCCGgCgcgCAGCCg- -3'
miRNA:   3'- gauUCCCCGUG--ACGGGU-Ga--GUUGGgg -5'
3581 3' -56.8 NC_001650.1 + 31303 0.69 0.772314
Target:  5'- --cGGGGGCGCU--UCAUgCGACCCCa -3'
miRNA:   3'- gauUCCCCGUGAcgGGUGaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 598 0.68 0.799444
Target:  5'- -gAGGGGGCgaggccggGCUGCCgCcCUCccccgGGCCCCc -3'
miRNA:   3'- gaUUCCCCG--------UGACGG-GuGAG-----UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 5202 0.68 0.799444
Target:  5'- --uAGGGGCcCUGCCaggcauggggaACUCu-CCCCa -3'
miRNA:   3'- gauUCCCCGuGACGGg----------UGAGuuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 111270 0.68 0.799444
Target:  5'- ---uGGGGC-CUcGCCCGCagCAgugcccGCCCCa -3'
miRNA:   3'- gauuCCCCGuGA-CGGGUGa-GU------UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 48252 0.7 0.734481
Target:  5'- -cGAGGGGgGCUGCUUccagGCggcUAGCCCCc -3'
miRNA:   3'- gaUUCCCCgUGACGGG----UGa--GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 180347 0.7 0.734481
Target:  5'- gCUGAGGGGgaCGCUGCCa----GACCCUg -3'
miRNA:   3'- -GAUUCCCC--GUGACGGgugagUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 57977 0.7 0.734481
Target:  5'- ---cGGGGCgucgauggGCUGUCCGaacCUCuGCCCCa -3'
miRNA:   3'- gauuCCCCG--------UGACGGGU---GAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 76640 0.7 0.695266
Target:  5'- -gAAGGcGCGC-GCCUuCUCGGCCCCc -3'
miRNA:   3'- gaUUCCcCGUGaCGGGuGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 90810 0.7 0.705169
Target:  5'- gUGGGGGGCagguugauGCUGUCCAC-CAGgUCCu -3'
miRNA:   3'- gAUUCCCCG--------UGACGGGUGaGUUgGGG- -5'
3581 3' -56.8 NC_001650.1 + 31028 0.7 0.712065
Target:  5'- -cGGGGGGCGCccuCCCACUUuuuugacgcgcacaGACCCUc -3'
miRNA:   3'- gaUUCCCCGUGac-GGGUGAG--------------UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 27598 0.7 0.715011
Target:  5'- ----cGGGCG-UGCCCGcCUCGGCCCUc -3'
miRNA:   3'- gauucCCCGUgACGGGU-GAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 77252 0.7 0.724785
Target:  5'- --cAGGGGCACgagaCCAC-CGACUCCu -3'
miRNA:   3'- gauUCCCCGUGacg-GGUGaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 129051 0.7 0.724785
Target:  5'- ---uGGaGGCGgUGgCCGCgcgCGACCCCg -3'
miRNA:   3'- gauuCC-CCGUgACgGGUGa--GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 68681 0.7 0.724785
Target:  5'- -cAGGGGGCGCcGUCUcucccccgGCUCAaagagcGCCCCc -3'
miRNA:   3'- gaUUCCCCGUGaCGGG--------UGAGU------UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 22984 0.7 0.731581
Target:  5'- -gAGGGGGUcuucaagaccuucgGCUGCCgGgUCAGCCUg -3'
miRNA:   3'- gaUUCCCCG--------------UGACGGgUgAGUUGGGg -5'
3581 3' -56.8 NC_001650.1 + 13640 0.7 0.734481
Target:  5'- gCUGAGGGGgaCGCUGCCa----GACCCUg -3'
miRNA:   3'- -GAUUCCCC--GUGACGGgugagUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 167305 0.68 0.799444
Target:  5'- -gAGGGGGCgaggccggGCUGCCgCcCUCccccgGGCCCCc -3'
miRNA:   3'- gaUUCCCCG--------UGACGG-GuGAG-----UUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.