miRNA display CGI


Results 101 - 120 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 77252 0.7 0.724785
Target:  5'- --cAGGGGCACgagaCCAC-CGACUCCu -3'
miRNA:   3'- gauUCCCCGUGacg-GGUGaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 129051 0.7 0.724785
Target:  5'- ---uGGaGGCGgUGgCCGCgcgCGACCCCg -3'
miRNA:   3'- gauuCC-CCGUgACgGGUGa--GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 68681 0.7 0.724785
Target:  5'- -cAGGGGGCGCcGUCUcucccccgGCUCAaagagcGCCCCc -3'
miRNA:   3'- gaUUCCCCGUGaCGGG--------UGAGU------UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 22984 0.7 0.731581
Target:  5'- -gAGGGGGUcuucaagaccuucgGCUGCCgGgUCAGCCUg -3'
miRNA:   3'- gaUUCCCCG--------------UGACGGgUgAGUUGGGg -5'
3581 3' -56.8 NC_001650.1 + 49657 0.7 0.734481
Target:  5'- cCUGGGGGuGgGCcuUGCCC-CUCuacGCCCCc -3'
miRNA:   3'- -GAUUCCC-CgUG--ACGGGuGAGu--UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 48252 0.7 0.734481
Target:  5'- -cGAGGGGgGCUGCUUccagGCggcUAGCCCCc -3'
miRNA:   3'- gaUUCCCCgUGACGGG----UGa--GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 180347 0.7 0.734481
Target:  5'- gCUGAGGGGgaCGCUGCCa----GACCCUg -3'
miRNA:   3'- -GAUUCCCC--GUGACGGgugagUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 57977 0.7 0.734481
Target:  5'- ---cGGGGCgucgauggGCUGUCCGaacCUCuGCCCCa -3'
miRNA:   3'- gauuCCCCG--------UGACGGGU---GAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 13640 0.7 0.734481
Target:  5'- gCUGAGGGGgaCGCUGCCa----GACCCUg -3'
miRNA:   3'- -GAUUCCCC--GUGACGGgugagUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 172546 0.8 0.236864
Target:  5'- uCUAAGGGG-GCcGCCCACUCuACCCUg -3'
miRNA:   3'- -GAUUCCCCgUGaCGGGUGAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 6772 0.9 0.056549
Target:  5'- gCUuAGGGGUACUGCCCACUCuACUCCa -3'
miRNA:   3'- -GAuUCCCCGUGACGGGUGAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 173478 0.9 0.056549
Target:  5'- gCUuAGGGGUACUGCCCACUCuACUCCa -3'
miRNA:   3'- -GAuUCCCCGUGACGGGUGAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 6028 0.92 0.037847
Target:  5'- cCUAGGGGGC-CUGCCCACUCuACCCUa -3'
miRNA:   3'- -GAUUCCCCGuGACGGGUGAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 172735 0.92 0.037847
Target:  5'- cCUAGGGGGC-CUGCCCACUCuACCCUa -3'
miRNA:   3'- -GAUUCCCCGuGACGGGUGAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 6152 1.04 0.005961
Target:  5'- gCUAAGGGGgACUGCCCACUCAACCCCa -3'
miRNA:   3'- -GAUUCCCCgUGACGGGUGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 172859 1.04 0.005961
Target:  5'- gCUAAGGGGgACUGCCCACUCAACCCCa -3'
miRNA:   3'- -GAUUCCCCgUGACGGGUGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 6375 1.12 0.001739
Target:  5'- gCUAAGGGGCACUGCCCACUCAACCCCa -3'
miRNA:   3'- -GAUUCCCCGUGACGGGUGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 6539 1.12 0.001739
Target:  5'- gCUAAGGGGCACUGCCCACUCAACCCCa -3'
miRNA:   3'- -GAUUCCCCGUGACGGGUGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 173082 1.12 0.001739
Target:  5'- gCUAAGGGGCACUGCCCACUCAACCCCa -3'
miRNA:   3'- -GAUUCCCCGUGACGGGUGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 6655 0.66 0.917214
Target:  5'- ---uGGGG-GCUGCCCAUau--CCCCu -3'
miRNA:   3'- gauuCCCCgUGACGGGUGaguuGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.