Results 41 - 60 of 228 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3581 | 3' | -56.8 | NC_001650.1 | + | 37453 | 0.71 | 0.675316 |
Target: 5'- --cGGGGGCGCacuccacccgccUGCCCAauaugucugcCAGCCCCu -3' miRNA: 3'- gauUCCCCGUG------------ACGGGUga--------GUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 132742 | 0.75 | 0.441512 |
Target: 5'- -cGGGGGGCGCgcguUGCCCAgguaaGACCCCu -3' miRNA: 3'- gaUUCCCCGUG----ACGGGUgag--UUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 6539 | 1.12 | 0.001739 |
Target: 5'- gCUAAGGGGCACUGCCCACUCAACCCCa -3' miRNA: 3'- -GAUUCCCCGUGACGGGUGAGUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 92906 | 0.71 | 0.665286 |
Target: 5'- -cAAGaGGGCGCUGuCCCGCUgcACCUa -3' miRNA: 3'- gaUUC-CCCGUGAC-GGGUGAguUGGGg -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 173082 | 1.12 | 0.001739 |
Target: 5'- gCUAAGGGGCACUGCCCACUCAACCCCa -3' miRNA: 3'- -GAUUCCCCGUGACGGGUGAGUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 18186 | 0.68 | 0.808205 |
Target: 5'- gUGGGGGGCGCU-CUUcUUCAcCCCCg -3' miRNA: 3'- gAUUCCCCGUGAcGGGuGAGUuGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 172859 | 1.04 | 0.005961 |
Target: 5'- gCUAAGGGGgACUGCCCACUCAACCCCa -3' miRNA: 3'- -GAUUCCCCgUGACGGGUGAGUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 8134 | 0.68 | 0.808205 |
Target: 5'- --uGGGGGa--UGUCCACU-AGCCCCu -3' miRNA: 3'- gauUCCCCgugACGGGUGAgUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 30234 | 0.68 | 0.799444 |
Target: 5'- -gGAGGGGuCGCaguaGCCCAggaggcugacCUCGGCCgCCa -3' miRNA: 3'- gaUUCCCC-GUGa---CGGGU----------GAGUUGG-GG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 57460 | 0.69 | 0.781491 |
Target: 5'- ---cGGGGCGCaGCagcaacagCCGCccCAACCCCa -3' miRNA: 3'- gauuCCCCGUGaCG--------GGUGa-GUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 71884 | 0.69 | 0.744091 |
Target: 5'- --uGGGGGaugUUGCCCAC-CAugCCCc -3' miRNA: 3'- gauUCCCCgu-GACGGGUGaGUugGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 109476 | 0.7 | 0.724785 |
Target: 5'- ---cGGGGCGCccCCCACUaucgccACCCCg -3' miRNA: 3'- gauuCCCCGUGacGGGUGAgu----UGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 49863 | 0.7 | 0.685313 |
Target: 5'- -aGAGGGGCAagGCCCAC----CCCCa -3' miRNA: 3'- gaUUCCCCGUgaCGGGUGaguuGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 169848 | 0.71 | 0.655229 |
Target: 5'- -gGAGGGGagggGCUGCuCCAUUaauggaCAGCCCCc -3' miRNA: 3'- gaUUCCCCg---UGACG-GGUGA------GUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 173202 | 0.71 | 0.63507 |
Target: 5'- -cAGGGGGagUUGCCCACU--ACCCCc -3' miRNA: 3'- gaUUCCCCguGACGGGUGAguUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 182126 | 0.73 | 0.544083 |
Target: 5'- -gAAGGGGgGa-GCCCGCugcggccUCAACCCCg -3' miRNA: 3'- gaUUCCCCgUgaCGGGUG-------AGUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 130153 | 0.74 | 0.47798 |
Target: 5'- --cAGGGGCG-UGCCCGCcaCAGCCUCg -3' miRNA: 3'- gauUCCCCGUgACGGGUGa-GUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 27009 | 0.77 | 0.326085 |
Target: 5'- -gAAGGGGCGCgcggcucccccgGCCCGCUCcucaAACUCCg -3' miRNA: 3'- gaUUCCCCGUGa-----------CGGGUGAG----UUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 5839 | 0.8 | 0.236864 |
Target: 5'- uCUAAGGGG-GCcGCCCACUCuACCCUg -3' miRNA: 3'- -GAUUCCCCgUGaCGGGUGAGuUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 6028 | 0.92 | 0.037847 |
Target: 5'- cCUAGGGGGC-CUGCCCACUCuACCCUa -3' miRNA: 3'- -GAUUCCCCGuGACGGGUGAGuUGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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