miRNA display CGI


Results 81 - 100 of 228 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 48031 0.69 0.781491
Target:  5'- -aAAGaGGGCgGCgGCCCugUCuGCCCg -3'
miRNA:   3'- gaUUC-CCCG-UGaCGGGugAGuUGGGg -5'
3581 3' -56.8 NC_001650.1 + 53056 0.68 0.807336
Target:  5'- -aGAGGaGGCGC-GCCCGCUCccagggcgggcagGGCgCCg -3'
miRNA:   3'- gaUUCC-CCGUGaCGGGUGAG-------------UUGgGG- -5'
3581 3' -56.8 NC_001650.1 + 129443 0.68 0.808205
Target:  5'- -gGAGuGGGCgucggacaGCUuCCC-CUCGACCCCc -3'
miRNA:   3'- gaUUC-CCCG--------UGAcGGGuGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 131083 0.68 0.816811
Target:  5'- uCUcGGGGGCGCUcuuguccaGCCCcccgguCUUGGCCUCg -3'
miRNA:   3'- -GAuUCCCCGUGA--------CGGGu-----GAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 59046 0.68 0.824417
Target:  5'- --uGGGGGCucauCUGCCUcucccggGCcCGAUCCCa -3'
miRNA:   3'- gauUCCCCGu---GACGGG-------UGaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 74468 0.68 0.833525
Target:  5'- uUGAGGGGUACcacagaGCCCAC-CcuCUCCu -3'
miRNA:   3'- gAUUCCCCGUGa-----CGGGUGaGuuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 110928 0.67 0.840015
Target:  5'- gCUGAGGcuguugcugcugcGGCAgccuggcCUGCCCGCUgGGUCCCg -3'
miRNA:   3'- -GAUUCC-------------CCGU-------GACGGGUGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 3141 0.71 0.655229
Target:  5'- -gGAGGGGagggGCUGCuCCAUUaauggaCAGCCCCc -3'
miRNA:   3'- gaUUCCCCg---UGACG-GGUGA------GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 6495 0.71 0.63507
Target:  5'- -cAGGGGGagUUGCCCACU--ACCCCc -3'
miRNA:   3'- gaUUCCCCguGACGGGUGAguUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 15419 0.73 0.544083
Target:  5'- -gAAGGGGgGa-GCCCGCugcggccUCAACCCCg -3'
miRNA:   3'- gaUUCCCCgUgaCGGGUG-------AGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 181856 0.67 0.858007
Target:  5'- --uAGGGGCGCUuuccGCCCggggGCUCugcgguuacaucagcACCCCc -3'
miRNA:   3'- gauUCCCCGUGA----CGGG----UGAGu--------------UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 21965 0.67 0.872082
Target:  5'- -cAGGGGGCGCcGCagCugUUgcuGCCCCc -3'
miRNA:   3'- gaUUCCCCGUGaCGg-GugAGu--UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 165559 0.67 0.87919
Target:  5'- --uAGGGGCucGCcGCCUucuUUCAACCCg -3'
miRNA:   3'- gauUCCCCG--UGaCGGGu--GAGUUGGGg -5'
3581 3' -56.8 NC_001650.1 + 124363 0.66 0.886084
Target:  5'- ---uGGGGCGCUGuuCCCAUcggCAggcGCUCCg -3'
miRNA:   3'- gauuCCCCGUGAC--GGGUGa--GU---UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 118452 0.66 0.892759
Target:  5'- ---uGGcGGCcaaGCUGCCCGag-AACCCCg -3'
miRNA:   3'- gauuCC-CCG---UGACGGGUgagUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 6152 1.04 0.005961
Target:  5'- gCUAAGGGGgACUGCCCACUCAACCCCa -3'
miRNA:   3'- -GAUUCCCCgUGACGGGUGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 173478 0.9 0.056549
Target:  5'- gCUuAGGGGUACUGCCCACUCuACUCCa -3'
miRNA:   3'- -GAuUCCCCGUGACGGGUGAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 184390 0.78 0.292474
Target:  5'- -gAGGGGGCGugGCCCACUU-ACCCCu -3'
miRNA:   3'- gaUUCCCCGUgaCGGGUGAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 63141 0.76 0.373611
Target:  5'- aUGAGGGGCACgUGCCa----GACCCCa -3'
miRNA:   3'- gAUUCCCCGUG-ACGGgugagUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 59945 0.74 0.506279
Target:  5'- --cGGGGGcCACggGCCC-CUCGacGCCCCu -3'
miRNA:   3'- gauUCCCC-GUGa-CGGGuGAGU--UGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.