miRNA display CGI


Results 101 - 120 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 81836 0.66 0.905442
Target:  5'- --cGGGGGaGCUgGCCCGCgcggCGcgcGCCCUg -3'
miRNA:   3'- gauUCCCCgUGA-CGGGUGa---GU---UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 83940 0.66 0.911443
Target:  5'- --cAGGGcauGCACgcGUCCACaaaagagaUCAGCCCCu -3'
miRNA:   3'- gauUCCC---CGUGa-CGGGUG--------AGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 59475 0.66 0.911443
Target:  5'- -cGGGGGGCACcuuccUGCCCAggacgcagUCGuCCCUg -3'
miRNA:   3'- gaUUCCCCGUG-----ACGGGUg-------AGUuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 63098 0.66 0.911443
Target:  5'- uCUGGGGGuCGC-GCCCccggguGCUCcggAGCCCCc -3'
miRNA:   3'- -GAUUCCCcGUGaCGGG------UGAG---UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 4068 0.68 0.834343
Target:  5'- gUAGGGGGCuucCUaGCCCcCUaccagcauugcaacaGACCCCg -3'
miRNA:   3'- gAUUCCCCGu--GA-CGGGuGAg--------------UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 8252 0.68 0.825253
Target:  5'- aUGGGGGGC-CUGUggguaUUACUCAAUgCCCa -3'
miRNA:   3'- gAUUCCCCGuGACG-----GGUGAGUUG-GGG- -5'
3581 3' -56.8 NC_001650.1 + 59945 0.74 0.506279
Target:  5'- --cGGGGGcCACggGCCC-CUCGacGCCCCu -3'
miRNA:   3'- gauUCCCC-GUGa-CGGGuGAGU--UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 48471 0.72 0.594783
Target:  5'- gCUAGGGGGCuaGCcGCCUggaagCAGCCCCc -3'
miRNA:   3'- -GAUUCCCCG--UGaCGGGuga--GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 6495 0.71 0.63507
Target:  5'- -cAGGGGGagUUGCCCACU--ACCCCc -3'
miRNA:   3'- gaUUCCCCguGACGGGUGAguUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 92906 0.71 0.665286
Target:  5'- -cAAGaGGGCGCUGuCCCGCUgcACCUa -3'
miRNA:   3'- gaUUC-CCCGUGAC-GGGUGAguUGGGg -5'
3581 3' -56.8 NC_001650.1 + 49863 0.7 0.685313
Target:  5'- -aGAGGGGCAagGCCCAC----CCCCa -3'
miRNA:   3'- gaUUCCCCGUgaCGGGUGaguuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 172573 0.7 0.734481
Target:  5'- --uGGGGGCua--CCCACUaAGCCCCg -3'
miRNA:   3'- gauUCCCCGugacGGGUGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 71884 0.69 0.744091
Target:  5'- --uGGGGGaugUUGCCCAC-CAugCCCc -3'
miRNA:   3'- gauUCCCCgu-GACGGGUGaGUugGGG- -5'
3581 3' -56.8 NC_001650.1 + 157498 0.69 0.790537
Target:  5'- --cGGGGGCggggaGgUGCCCccaggcgcauggGCUaCAGCCCCg -3'
miRNA:   3'- gauUCCCCG-----UgACGGG------------UGA-GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 53056 0.68 0.807336
Target:  5'- -aGAGGaGGCGC-GCCCGCUCccagggcgggcagGGCgCCg -3'
miRNA:   3'- gaUUCC-CCGUGaCGGGUGAG-------------UUGgGG- -5'
3581 3' -56.8 NC_001650.1 + 101801 0.68 0.808205
Target:  5'- -aGAGGGGC--UGCCCGCUgGcggagaagauACCCg -3'
miRNA:   3'- gaUUCCCCGugACGGGUGAgU----------UGGGg -5'
3581 3' -56.8 NC_001650.1 + 131083 0.68 0.816811
Target:  5'- uCUcGGGGGCGCUcuuguccaGCCCcccgguCUUGGCCUCg -3'
miRNA:   3'- -GAuUCCCCGUGA--------CGGGu-----GAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 134129 0.68 0.825253
Target:  5'- uCUGGGGGGCGCc-CCCAgCUguACUCUg -3'
miRNA:   3'- -GAUUCCCCGUGacGGGU-GAguUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 58430 0.66 0.911443
Target:  5'- --cAGGGGC--UGCCCGC-CAAUCUa -3'
miRNA:   3'- gauUCCCCGugACGGGUGaGUUGGGg -5'
3581 3' -56.8 NC_001650.1 + 141944 0.68 0.825253
Target:  5'- -aGGGGGGCAaacCCC-CUCGGCCgCg -3'
miRNA:   3'- gaUUCCCCGUgacGGGuGAGUUGGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.