miRNA display CGI


Results 121 - 140 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 42467 0.68 0.815957
Target:  5'- ---cGGGGCuauGCUaCCCugUCAuccaggaACCCCa -3'
miRNA:   3'- gauuCCCCG---UGAcGGGugAGU-------UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 76640 0.7 0.695266
Target:  5'- -gAAGGcGCGC-GCCUuCUCGGCCCCc -3'
miRNA:   3'- gaUUCCcCGUGaCGGGuGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 56287 0.68 0.825253
Target:  5'- -gGGGGGGUGgUGCCUggcGCgc-GCCCCa -3'
miRNA:   3'- gaUUCCCCGUgACGGG---UGaguUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 182954 0.76 0.389913
Target:  5'- -gGAGGuGGC-CUGCCCACU-GACCUCa -3'
miRNA:   3'- gaUUCC-CCGuGACGGGUGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 141944 0.68 0.825253
Target:  5'- -aGGGGGGCAaacCCC-CUCGGCCgCg -3'
miRNA:   3'- gaUUCCCCGUgacGGGuGAGUUGGgG- -5'
3581 3' -56.8 NC_001650.1 + 125788 0.68 0.816811
Target:  5'- -gAAGGGGCGCgGCgUCGaaggcggaUCAAUCCCa -3'
miRNA:   3'- gaUUCCCCGUGaCG-GGUg-------AGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 156867 0.68 0.808205
Target:  5'- uCUcGGGGGCAUcgGCCaGCUCGagaGCCUCc -3'
miRNA:   3'- -GAuUCCCCGUGa-CGGgUGAGU---UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 122060 0.73 0.554917
Target:  5'- ---cGGGGCug-GCCCACaUCAggcGCCCCc -3'
miRNA:   3'- gauuCCCCGugaCGGGUG-AGU---UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 78959 0.7 0.685313
Target:  5'- --uGGGGGCGCagaUGCCC-CgCGGCCCa -3'
miRNA:   3'- gauUCCCCGUG---ACGGGuGaGUUGGGg -5'
3581 3' -56.8 NC_001650.1 + 90810 0.7 0.705169
Target:  5'- gUGGGGGGCagguugauGCUGUCCAC-CAGgUCCu -3'
miRNA:   3'- gAUUCCCCG--------UGACGGGUGaGUUgGGG- -5'
3581 3' -56.8 NC_001650.1 + 31028 0.7 0.712065
Target:  5'- -cGGGGGGCGCccuCCCACUUuuuugacgcgcacaGACCCUc -3'
miRNA:   3'- gaUUCCCCGUGac-GGGUGAG--------------UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 27598 0.7 0.715011
Target:  5'- ----cGGGCG-UGCCCGcCUCGGCCCUc -3'
miRNA:   3'- gauucCCCGUgACGGGU-GAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 159984 0.68 0.807336
Target:  5'- uCUcuGGGGcCACcuaguggccucuuUGCUC-CUCAACCCCc -3'
miRNA:   3'- -GAuuCCCC-GUG-------------ACGGGuGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 45210 0.68 0.816811
Target:  5'- ---cGGGGCGCgGUUCcacggGCUCAcCCCCa -3'
miRNA:   3'- gauuCCCCGUGaCGGG-----UGAGUuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 117890 0.66 0.917214
Target:  5'- ---uGGGGCuGCUGCaCCAcCUCGGCgCa -3'
miRNA:   3'- gauuCCCCG-UGACG-GGU-GAGUUGgGg -5'
3581 3' -56.8 NC_001650.1 + 134156 0.66 0.917214
Target:  5'- -aAGGGGGCGa---CCGCgggCGGCCCUc -3'
miRNA:   3'- gaUUCCCCGUgacgGGUGa--GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 26552 0.66 0.917214
Target:  5'- -cGGGGGGCgagguguucucGCUGCCCcuGCUCucggGGCUCa -3'
miRNA:   3'- gaUUCCCCG-----------UGACGGG--UGAG----UUGGGg -5'
3581 3' -56.8 NC_001650.1 + 46363 0.68 0.808205
Target:  5'- ---cGGGGCGCgGCgCCGCaUCGGCCg- -3'
miRNA:   3'- gauuCCCCGUGaCG-GGUG-AGUUGGgg -5'
3581 3' -56.8 NC_001650.1 + 51006 0.68 0.808205
Target:  5'- --cGGGGGCGCggGCgCGg-CGGCCCCc -3'
miRNA:   3'- gauUCCCCGUGa-CGgGUgaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 26745 0.73 0.564821
Target:  5'- -gGAGGGGCugUGCgCCGCcuccaggCAGCUCUu -3'
miRNA:   3'- gaUUCCCCGugACG-GGUGa------GUUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.