miRNA display CGI


Results 141 - 160 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 26552 0.66 0.917214
Target:  5'- -cGGGGGGCgagguguucucGCUGCCCcuGCUCucggGGCUCa -3'
miRNA:   3'- gaUUCCCCG-----------UGACGGG--UGAG----UUGGGg -5'
3581 3' -56.8 NC_001650.1 + 5202 0.68 0.799444
Target:  5'- --uAGGGGCcCUGCCaggcauggggaACUCu-CCCCa -3'
miRNA:   3'- gauUCCCCGuGACGGg----------UGAGuuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 111270 0.68 0.799444
Target:  5'- ---uGGGGC-CUcGCCCGCagCAgugcccGCCCCa -3'
miRNA:   3'- gauuCCCCGuGA-CGGGUGa-GU------UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 167305 0.68 0.799444
Target:  5'- -gAGGGGGCgaggccggGCUGCCgCcCUCccccgGGCCCCc -3'
miRNA:   3'- gaUUCCCCG--------UGACGG-GuGAG-----UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 171909 0.68 0.799444
Target:  5'- --uAGGGGCcCUGCCaggcauggggaACUCu-CCCCa -3'
miRNA:   3'- gauUCCCCGuGACGGg----------UGAGuuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 117890 0.66 0.917214
Target:  5'- ---uGGGGCuGCUGCaCCAcCUCGGCgCa -3'
miRNA:   3'- gauuCCCCG-UGACG-GGU-GAGUUGgGg -5'
3581 3' -56.8 NC_001650.1 + 3862 0.66 0.911443
Target:  5'- gUAGGGGGCuaggaaGCCCcCUacuCCCCu -3'
miRNA:   3'- gAUUCCCCGuga---CGGGuGAguuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 108722 0.66 0.910261
Target:  5'- -cGGGGGGCGucaaagacagccuCUuccccgaGCCC-CUCAgguGCCCCg -3'
miRNA:   3'- gaUUCCCCGU-------------GA-------CGGGuGAGU---UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 172653 0.66 0.905442
Target:  5'- gUGAGuGGGCAgUcCCC-CUUAGCuCCCa -3'
miRNA:   3'- gAUUC-CCCGUgAcGGGuGAGUUG-GGG- -5'
3581 3' -56.8 NC_001650.1 + 76640 0.7 0.695266
Target:  5'- -gAAGGcGCGC-GCCUuCUCGGCCCCc -3'
miRNA:   3'- gaUUCCcCGUGaCGGGuGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 90810 0.7 0.705169
Target:  5'- gUGGGGGGCagguugauGCUGUCCAC-CAGgUCCu -3'
miRNA:   3'- gAUUCCCCG--------UGACGGGUGaGUUgGGG- -5'
3581 3' -56.8 NC_001650.1 + 31028 0.7 0.712065
Target:  5'- -cGGGGGGCGCccuCCCACUUuuuugacgcgcacaGACCCUc -3'
miRNA:   3'- gaUUCCCCGUGac-GGGUGAG--------------UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 27598 0.7 0.715011
Target:  5'- ----cGGGCG-UGCCCGcCUCGGCCCUc -3'
miRNA:   3'- gauucCCCGUgACGGGU-GAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 52616 0.66 0.917214
Target:  5'- --uGGGGGcCACUgGCCCGggggucCUCGgcACCUCg -3'
miRNA:   3'- gauUCCCC-GUGA-CGGGU------GAGU--UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 46363 0.68 0.808205
Target:  5'- ---cGGGGCGCgGCgCCGCaUCGGCCg- -3'
miRNA:   3'- gauuCCCCGUGaCG-GGUG-AGUUGGgg -5'
3581 3' -56.8 NC_001650.1 + 159984 0.68 0.807336
Target:  5'- uCUcuGGGGcCACcuaguggccucuuUGCUC-CUCAACCCCc -3'
miRNA:   3'- -GAuuCCCC-GUG-------------ACGGGuGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 174635 0.68 0.799444
Target:  5'- -aGAGGGGCuaguggACUccCCCAUUgGGCCCCc -3'
miRNA:   3'- gaUUCCCCG------UGAc-GGGUGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 89308 0.68 0.799444
Target:  5'- -aGAGGGcGCAC-GCCCuGCU-GACCCUg -3'
miRNA:   3'- gaUUCCC-CGUGaCGGG-UGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 173553 0.66 0.905442
Target:  5'- -cAGGGGGCuuuAUUGCCC---CAugCCCu -3'
miRNA:   3'- gaUUCCCCG---UGACGGGugaGUugGGG- -5'
3581 3' -56.8 NC_001650.1 + 5947 0.66 0.905442
Target:  5'- uUGAGuGGGCAgUcCCC-CUUAGCuCCCa -3'
miRNA:   3'- gAUUC-CCCGUgAcGGGuGAGUUG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.