Results 41 - 60 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3583 | 5' | -62 | NC_001650.1 | + | 17159 | 0.74 | 0.25304 |
Target: 5'- aUGGGGGCUuCCCACUGagauggcCACCCccgaGGUg -3' miRNA: 3'- -ACCCCCGAuGGGUGAC-------GUGGGag--CCG- -5' |
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3583 | 5' | -62 | NC_001650.1 | + | 129153 | 0.75 | 0.242262 |
Target: 5'- cGGGGGCgGCCCuCUuCGCCCUCucggaGGCg -3' miRNA: 3'- aCCCCCGaUGGGuGAcGUGGGAG-----CCG- -5' |
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3583 | 5' | -62 | NC_001650.1 | + | 109280 | 0.75 | 0.231332 |
Target: 5'- gGGGGGCgcCCCGCUcGuCGCCCU-GGCc -3' miRNA: 3'- aCCCCCGauGGGUGA-C-GUGGGAgCCG- -5' |
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3583 | 5' | -62 | NC_001650.1 | + | 24942 | 0.76 | 0.20582 |
Target: 5'- cGGGGGUccugcUGCCCuGCUGgGCCCagGGCa -3' miRNA: 3'- aCCCCCG-----AUGGG-UGACgUGGGagCCG- -5' |
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3583 | 5' | -62 | NC_001650.1 | + | 133304 | 0.76 | 0.20582 |
Target: 5'- aGGGGGCUGCCCAggagGCGCCg--GGCg -3' miRNA: 3'- aCCCCCGAUGGGUga--CGUGGgagCCG- -5' |
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3583 | 5' | -62 | NC_001650.1 | + | 178406 | 0.72 | 0.360451 |
Target: 5'- aGGGGGC-GCCCAgaGCACCCaccgaGaGCu -3' miRNA: 3'- aCCCCCGaUGGGUgaCGUGGGag---C-CG- -5' |
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3583 | 5' | -62 | NC_001650.1 | + | 35172 | 0.71 | 0.383675 |
Target: 5'- cGGGGGUggugcCCCACaccaGCACCCUggaccCGGUg -3' miRNA: 3'- aCCCCCGau---GGGUGa---CGUGGGA-----GCCG- -5' |
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3583 | 5' | -62 | NC_001650.1 | + | 131922 | 0.69 | 0.504103 |
Target: 5'- gGGcGGGCUuCCUGCUGUggGCCCUgcucaCGGUg -3' miRNA: 3'- aCC-CCCGAuGGGUGACG--UGGGA-----GCCG- -5' |
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3583 | 5' | -62 | NC_001650.1 | + | 175635 | 0.69 | 0.494923 |
Target: 5'- cGGGGGaguCCCAUggGCcuaACCC-CGGCa -3' miRNA: 3'- aCCCCCgauGGGUGa-CG---UGGGaGCCG- -5' |
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3583 | 5' | -62 | NC_001650.1 | + | 117888 | 0.7 | 0.467857 |
Target: 5'- cGuGGGGCU----GCUGCACCacCUCGGCg -3' miRNA: 3'- aC-CCCCGAugggUGACGUGG--GAGCCG- -5' |
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3583 | 5' | -62 | NC_001650.1 | + | 50261 | 0.7 | 0.467857 |
Target: 5'- -aGGGGC-GCCUcuCUGCGCCCgggagcgggCGGCg -3' miRNA: 3'- acCCCCGaUGGGu-GACGUGGGa--------GCCG- -5' |
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3583 | 5' | -62 | NC_001650.1 | + | 36083 | 0.7 | 0.467857 |
Target: 5'- aGGGGGUggagguguaCCAgUGC-CCCUCGGa -3' miRNA: 3'- aCCCCCGaug------GGUgACGuGGGAGCCg -5' |
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3583 | 5' | -62 | NC_001650.1 | + | 141243 | 0.7 | 0.459004 |
Target: 5'- -cGGGGUccCCCGgUuCGCCCUCGGCc -3' miRNA: 3'- acCCCCGauGGGUgAcGUGGGAGCCG- -5' |
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3583 | 5' | -62 | NC_001650.1 | + | 71254 | 0.7 | 0.459004 |
Target: 5'- gGGGGGCggagaACCCcCUGUaccaGCCCguggaGGCg -3' miRNA: 3'- aCCCCCGa----UGGGuGACG----UGGGag---CCG- -5' |
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3583 | 5' | -62 | NC_001650.1 | + | 8928 | 0.7 | 0.459004 |
Target: 5'- cGGGGGaguCCCAUgggGCcuaACCC-CGGCa -3' miRNA: 3'- aCCCCCgauGGGUGa--CG---UGGGaGCCG- -5' |
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3583 | 5' | -62 | NC_001650.1 | + | 122147 | 0.7 | 0.432998 |
Target: 5'- cGGGGGCgGCgggagggggagaCgGCgGCGCCCUgGGCa -3' miRNA: 3'- aCCCCCGaUG------------GgUGaCGUGGGAgCCG- -5' |
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3583 | 5' | -62 | NC_001650.1 | + | 121590 | 0.7 | 0.432998 |
Target: 5'- cGGGGGCgGCggaggGCaGCGCCCUCGGg -3' miRNA: 3'- aCCCCCGaUGgg---UGaCGUGGGAGCCg -5' |
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3583 | 5' | -62 | NC_001650.1 | + | 50668 | 0.7 | 0.432998 |
Target: 5'- gGGGGGCcugaccuucUACCUGCUGCccgugACCCUggugaagccccaCGGCc -3' miRNA: 3'- aCCCCCG---------AUGGGUGACG-----UGGGA------------GCCG- -5' |
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3583 | 5' | -62 | NC_001650.1 | + | 61322 | 0.71 | 0.416145 |
Target: 5'- cUGGGacaGGUUGCCCAgCUcCGCCCUCaGCa -3' miRNA: 3'- -ACCC---CCGAUGGGU-GAcGUGGGAGcCG- -5' |
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3583 | 5' | -62 | NC_001650.1 | + | 18089 | 0.71 | 0.416145 |
Target: 5'- cUGGGGGCUcuaACCUcugAUaugggggaagaaUGCcuCCCUCGGCg -3' miRNA: 3'- -ACCCCCGA---UGGG---UG------------ACGu-GGGAGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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