miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3585 3' -53.6 NC_001650.1 + 30936 0.66 0.977244
Target:  5'- cCUCGU-CAUccGCGuccUCGcGGCCCCGc -3'
miRNA:   3'- uGAGUAuGUAuaCGU---AGC-CCGGGGCa -5'
3585 3' -53.6 NC_001650.1 + 6939 0.66 0.971152
Target:  5'- uGCUCAcUGCAUAUGCAUgaGGGCauugggcaauaaagCCCu- -3'
miRNA:   3'- -UGAGU-AUGUAUACGUAg-CCCG--------------GGGca -5'
3585 3' -53.6 NC_001650.1 + 173646 0.66 0.971152
Target:  5'- uGCUCAcUGCAUAUGCAUgaGGGCauugggcaauaaagCCCu- -3'
miRNA:   3'- -UGAGU-AUGUAUACGUAg-CCCG--------------GGGca -5'
3585 3' -53.6 NC_001650.1 + 28534 0.66 0.969085
Target:  5'- uGCUCGUACAUcAUGCAUgUGGGCagacagauguCCUGc -3'
miRNA:   3'- -UGAGUAUGUA-UACGUA-GCCCG----------GGGCa -5'
3585 3' -53.6 NC_001650.1 + 33819 0.66 0.969085
Target:  5'- aGCUCGUACcacAUGag-CGaGGCCCUGUa -3'
miRNA:   3'- -UGAGUAUGua-UACguaGC-CCGGGGCA- -5'
3585 3' -53.6 NC_001650.1 + 24372 0.66 0.969085
Target:  5'- cACUCGgugcGCAUGgagagGUA-CGGGCCCUGc -3'
miRNA:   3'- -UGAGUa---UGUAUa----CGUaGCCCGGGGCa -5'
3585 3' -53.6 NC_001650.1 + 73650 0.66 0.965952
Target:  5'- cGCagGUGCcug-GCGUCGGGCCCg-- -3'
miRNA:   3'- -UGagUAUGuauaCGUAGCCCGGGgca -5'
3585 3' -53.6 NC_001650.1 + 166366 0.66 0.96363
Target:  5'- cACUCAUACAUcaagaucuccagaGUGCcacccgcggccugUGGGCCCCuGUg -3'
miRNA:   3'- -UGAGUAUGUA-------------UACGua-----------GCCCGGGG-CA- -5'
3585 3' -53.6 NC_001650.1 + 173534 0.67 0.954044
Target:  5'- gACUCAaUGCAUAUGCAUUaaGGGCauugggcaauaaagCCCa- -3'
miRNA:   3'- -UGAGU-AUGUAUACGUAG--CCCG--------------GGGca -5'
3585 3' -53.6 NC_001650.1 + 6827 0.67 0.954044
Target:  5'- gACUCAaUGCAUAUGCAUUaaGGGCauugggcaauaaagCCCa- -3'
miRNA:   3'- -UGAGU-AUGUAUACGUAG--CCCG--------------GGGca -5'
3585 3' -53.6 NC_001650.1 + 7864 0.67 0.948664
Target:  5'- gACUCaAUGCAUAUGCAUgGGGguguuagccaaccaaCCCUa- -3'
miRNA:   3'- -UGAG-UAUGUAUACGUAgCCC---------------GGGGca -5'
3585 3' -53.6 NC_001650.1 + 174571 0.67 0.948664
Target:  5'- gACUCaAUGCAUAUGCAUgGGGguguuagccaaccaaCCCUa- -3'
miRNA:   3'- -UGAG-UAUGUAUACGUAgCCC---------------GGGGca -5'
3585 3' -53.6 NC_001650.1 + 7753 0.67 0.946928
Target:  5'- uGCUCAauaaAUAUGCAUgaGGGCCuuGg -3'
miRNA:   3'- -UGAGUaug-UAUACGUAg-CCCGGggCa -5'
3585 3' -53.6 NC_001650.1 + 174369 0.67 0.942421
Target:  5'- --cCAUGCAUAUGCAUUGaGUCCCc- -3'
miRNA:   3'- ugaGUAUGUAUACGUAGCcCGGGGca -5'
3585 3' -53.6 NC_001650.1 + 7662 0.67 0.942421
Target:  5'- --cCAUGCAUAUGCAUUGaGUCCCc- -3'
miRNA:   3'- ugaGUAUGUAUACGUAGCcCGGGGca -5'
3585 3' -53.6 NC_001650.1 + 6084 0.67 0.942421
Target:  5'- gACUaAUGCAUAUGCAUaGGGUCCa-- -3'
miRNA:   3'- -UGAgUAUGUAUACGUAgCCCGGGgca -5'
3585 3' -53.6 NC_001650.1 + 172791 0.67 0.942421
Target:  5'- gACUaAUGCAUAUGCAUaGGGUCCa-- -3'
miRNA:   3'- -UGAgUAUGUAUACGUAgCCCGGGgca -5'
3585 3' -53.6 NC_001650.1 + 71086 0.68 0.921959
Target:  5'- aGCUC--GCGUA-GCuggCGGGCCCCa- -3'
miRNA:   3'- -UGAGuaUGUAUaCGua-GCCCGGGGca -5'
3585 3' -53.6 NC_001650.1 + 174576 0.69 0.904049
Target:  5'- --cUAUGCAUAUGCAUCuGaGCCCCc- -3'
miRNA:   3'- ugaGUAUGUAUACGUAGcC-CGGGGca -5'
3585 3' -53.6 NC_001650.1 + 7869 0.69 0.904049
Target:  5'- --cUAUGCAUAUGCAUCuGaGCCCCc- -3'
miRNA:   3'- ugaGUAUGUAUACGUAGcC-CGGGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.