miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3585 5' -60 NC_001650.1 + 178790 0.66 0.791843
Target:  5'- nCAUGGGGGUC--AUGGGGGuauagGUgCa -3'
miRNA:   3'- uGUGCCCCCGGguUACCCCCua---CAgG- -5'
3585 5' -60 NC_001650.1 + 12083 0.66 0.791843
Target:  5'- nCAUGGGGGUC--AUGGGGGuauagGUgCa -3'
miRNA:   3'- uGUGCCCCCGGguUACCCCCua---CAgG- -5'
3585 5' -60 NC_001650.1 + 169613 0.66 0.783067
Target:  5'- cCACccuauuGGCCCAG-GGGGGcUGUCCa -3'
miRNA:   3'- uGUGccc---CCGGGUUaCCCCCuACAGG- -5'
3585 5' -60 NC_001650.1 + 2906 0.66 0.783067
Target:  5'- cCACccuauuGGCCCAG-GGGGGcUGUCCa -3'
miRNA:   3'- uGUGccc---CCGGGUUaCCCCCuACAGG- -5'
3585 5' -60 NC_001650.1 + 141286 0.66 0.783067
Target:  5'- gAUACGGGGuCUccgugaguCAcgGGGGGAUuUCCa -3'
miRNA:   3'- -UGUGCCCCcGG--------GUuaCCCCCUAcAGG- -5'
3585 5' -60 NC_001650.1 + 23370 0.66 0.783067
Target:  5'- gGCGCGGuGGGCCUGuaGGaGGccGUCCc -3'
miRNA:   3'- -UGUGCC-CCCGGGUuaCCcCCuaCAGG- -5'
3585 5' -60 NC_001650.1 + 181196 0.66 0.774166
Target:  5'- -gGCaGGGGUCCAuGUGGGcaGGG-GUCCa -3'
miRNA:   3'- ugUGcCCCCGGGU-UACCC--CCUaCAGG- -5'
3585 5' -60 NC_001650.1 + 100639 0.66 0.774166
Target:  5'- --cCGGGGGCCCcugggagggucuGAUGGaGGAU-UCCa -3'
miRNA:   3'- uguGCCCCCGGG------------UUACCcCCUAcAGG- -5'
3585 5' -60 NC_001650.1 + 181164 0.66 0.774166
Target:  5'- -gGCaGGGGUCCAuGUGGGcaGGG-GUCCa -3'
miRNA:   3'- ugUGcCCCCGGGU-UACCC--CCUaCAGG- -5'
3585 5' -60 NC_001650.1 + 14457 0.66 0.774166
Target:  5'- -gGCaGGGGUCCAuGUGGGcaGGG-GUCCa -3'
miRNA:   3'- ugUGcCCCCGGGU-UACCC--CCUaCAGG- -5'
3585 5' -60 NC_001650.1 + 14489 0.66 0.774166
Target:  5'- -gGCaGGGGUCCAuGUGGGcaGGG-GUCCa -3'
miRNA:   3'- ugUGcCCCCGGGU-UACCC--CCUaCAGG- -5'
3585 5' -60 NC_001650.1 + 24063 0.67 0.765149
Target:  5'- -gACGGGGGCCU-GUGGGcGGcccUGgCCg -3'
miRNA:   3'- ugUGCCCCCGGGuUACCC-CCu--ACaGG- -5'
3585 5' -60 NC_001650.1 + 170920 0.67 0.765149
Target:  5'- uCAUGGGGGgUC-AUGGGGGGUcuuagguaaugGUCa -3'
miRNA:   3'- uGUGCCCCCgGGuUACCCCCUA-----------CAGg -5'
3585 5' -60 NC_001650.1 + 142789 0.67 0.765149
Target:  5'- -gGCGGccGGGCCCAGacGGGGGucaagCCg -3'
miRNA:   3'- ugUGCC--CCCGGGUUa-CCCCCuaca-GG- -5'
3585 5' -60 NC_001650.1 + 4213 0.67 0.765149
Target:  5'- uCAUGGGGGgUC-AUGGGGGGUcuuagguaaugGUCa -3'
miRNA:   3'- uGUGCCCCCgGGuUACCCCCUA-----------CAGg -5'
3585 5' -60 NC_001650.1 + 49573 0.67 0.765149
Target:  5'- uGCACGGGguGGUCUcuguGAUGGGGGcgGa-- -3'
miRNA:   3'- -UGUGCCC--CCGGG----UUACCCCCuaCagg -5'
3585 5' -60 NC_001650.1 + 98331 0.67 0.765149
Target:  5'- -gGCGGGGGgCgAcgGGGGGugugGUUg -3'
miRNA:   3'- ugUGCCCCCgGgUuaCCCCCua--CAGg -5'
3585 5' -60 NC_001650.1 + 121081 0.67 0.756023
Target:  5'- gGCGCGGGGggcGCCCGuccUGGGGu---UCCg -3'
miRNA:   3'- -UGUGCCCC---CGGGUu--ACCCCcuacAGG- -5'
3585 5' -60 NC_001650.1 + 57969 0.67 0.756023
Target:  5'- gGCGCGGccgGGGCgUCGAUGGGc--UGUCCg -3'
miRNA:   3'- -UGUGCC---CCCG-GGUUACCCccuACAGG- -5'
3585 5' -60 NC_001650.1 + 86684 0.67 0.756023
Target:  5'- ---aGGaGGGCUUggUGGGGGAgaaccagGUCa -3'
miRNA:   3'- ugugCC-CCCGGGuuACCCCCUa------CAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.