miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3587 5' -52.2 NC_001650.1 + 4464 0.67 0.982757
Target:  5'- gGCUGGGUGgaggguaCCUcgcggucaUCGcauGACCAUUACCu -3'
miRNA:   3'- aUGACUCAC-------GGA--------AGCu--CUGGUGAUGG- -5'
3587 5' -52.2 NC_001650.1 + 9069 0.69 0.935313
Target:  5'- -uCUuGGUGCaCUUUGGGACCACUAgUg -3'
miRNA:   3'- auGAcUCACG-GAAGCUCUGGUGAUgG- -5'
3587 5' -52.2 NC_001650.1 + 9243 1.11 0.005349
Target:  5'- cUACUGAGUGCCUUCGAGACCACUACCa -3'
miRNA:   3'- -AUGACUCACGGAAGCUCUGGUGAUGG- -5'
3587 5' -52.2 NC_001650.1 + 19349 0.7 0.919136
Target:  5'- -gUUGAGUGCCaguuUUCuGGGGCCACaGCUg -3'
miRNA:   3'- auGACUCACGG----AAG-CUCUGGUGaUGG- -5'
3587 5' -52.2 NC_001650.1 + 44112 0.7 0.919136
Target:  5'- ---aGAGUGCCUg-GAGAucccuCCAUUACCa -3'
miRNA:   3'- augaCUCACGGAagCUCU-----GGUGAUGG- -5'
3587 5' -52.2 NC_001650.1 + 52977 0.77 0.585733
Target:  5'- aUACUcggccGGUGCCgcgUCGAGGCgCGCUGCCu -3'
miRNA:   3'- -AUGAc----UCACGGa--AGCUCUG-GUGAUGG- -5'
3587 5' -52.2 NC_001650.1 + 60046 0.69 0.935313
Target:  5'- -cCUGGGcUGCCUgccCGuGACCAUgGCCg -3'
miRNA:   3'- auGACUC-ACGGAa--GCuCUGGUGaUGG- -5'
3587 5' -52.2 NC_001650.1 + 67931 0.66 0.988124
Target:  5'- aUGCUGAG-GCacaucUCGAgGACCAUggGCCu -3'
miRNA:   3'- -AUGACUCaCGga---AGCU-CUGGUGa-UGG- -5'
3587 5' -52.2 NC_001650.1 + 68205 0.67 0.9809
Target:  5'- ---gGAGUGCCUguaCGAGugCGCcuCCu -3'
miRNA:   3'- augaCUCACGGAa--GCUCugGUGauGG- -5'
3587 5' -52.2 NC_001650.1 + 76844 0.67 0.976244
Target:  5'- gGCcGAGaaggcgcgcGCCUUCGAGACCuucauCUACg -3'
miRNA:   3'- aUGaCUCa--------CGGAAGCUCUGGu----GAUGg -5'
3587 5' -52.2 NC_001650.1 + 77769 0.75 0.710107
Target:  5'- -uUUGAGgaaUGUCUggaguuuuucUCGAGGCCGCUGCCg -3'
miRNA:   3'- auGACUC---ACGGA----------AGCUCUGGUGAUGG- -5'
3587 5' -52.2 NC_001650.1 + 83373 0.69 0.944861
Target:  5'- cACcGAGUGgCgggcCGAGGCC-CUGCCg -3'
miRNA:   3'- aUGaCUCACgGaa--GCUCUGGuGAUGG- -5'
3587 5' -52.2 NC_001650.1 + 111022 0.66 0.99083
Target:  5'- gGCUGGGcaGCCUggcucUGAGGCUGCUGgCg -3'
miRNA:   3'- aUGACUCa-CGGAa----GCUCUGGUGAUgG- -5'
3587 5' -52.2 NC_001650.1 + 114174 0.67 0.9809
Target:  5'- -uCUGuGUGgcugcccgucaCCUUCGAGGCUGuCUACCu -3'
miRNA:   3'- auGACuCAC-----------GGAAGCUCUGGU-GAUGG- -5'
3587 5' -52.2 NC_001650.1 + 114490 0.66 0.984837
Target:  5'- -cCUGAcgauGgcgGCCUUCGGGACCGggaUGCUg -3'
miRNA:   3'- auGACU----Ca--CGGAAGCUCUGGUg--AUGG- -5'
3587 5' -52.2 NC_001650.1 + 115873 0.69 0.935313
Target:  5'- gGCUGAGUGCCguacacCGGGcCCACg--- -3'
miRNA:   3'- aUGACUCACGGaa----GCUCuGGUGaugg -5'
3587 5' -52.2 NC_001650.1 + 116140 0.66 0.986558
Target:  5'- gGCUGAcauaaacagGUuCCUg-GAGGCCACUGCUg -3'
miRNA:   3'- aUGACU---------CAcGGAagCUCUGGUGAUGG- -5'
3587 5' -52.2 NC_001650.1 + 126008 0.68 0.957365
Target:  5'- cGCUGGGauugauccGCCUUCGAcGCCGC-GCCc -3'
miRNA:   3'- aUGACUCa-------CGGAAGCUcUGGUGaUGG- -5'
3587 5' -52.2 NC_001650.1 + 126072 0.68 0.964531
Target:  5'- gUGCUGGGUGCgCUguuggCGAgcGugCACcGCCu -3'
miRNA:   3'- -AUGACUCACG-GAa----GCU--CugGUGaUGG- -5'
3587 5' -52.2 NC_001650.1 + 129000 0.68 0.957365
Target:  5'- aGgUGAGgcagGCCUUCGAGGgCGCggGCg -3'
miRNA:   3'- aUgACUCa---CGGAAGCUCUgGUGa-UGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.