miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3588 3' -56.9 NC_001650.1 + 147617 0.66 0.919988
Target:  5'- cCGCUacaGGGGaaccgcuuUUGGGUCgCUGGcUCGGGg -3'
miRNA:   3'- -GCGA---CCCC--------AGUCCAGaGACCuAGUCC- -5'
3588 3' -56.9 NC_001650.1 + 151393 0.66 0.90857
Target:  5'- gGCUccGGuUCAGG-CUCUGGuUCAGGu -3'
miRNA:   3'- gCGAccCC-AGUCCaGAGACCuAGUCC- -5'
3588 3' -56.9 NC_001650.1 + 151435 0.66 0.90857
Target:  5'- gGCUccGGuUCAGG-CUCUGGcUCAGGu -3'
miRNA:   3'- gCGAccCC-AGUCCaGAGACCuAGUCC- -5'
3588 3' -56.9 NC_001650.1 + 151477 0.66 0.90857
Target:  5'- gGCUccGGuUCAGG-CUCUGGcUCAGGu -3'
miRNA:   3'- gCGAccCC-AGUCCaGAGACCuAGUCC- -5'
3588 3' -56.9 NC_001650.1 + 151519 0.66 0.90857
Target:  5'- gGCUccGGuUCAGG-CUCUGGcUCAGGu -3'
miRNA:   3'- gCGAccCC-AGUCCaGAGACCuAGUCC- -5'
3588 3' -56.9 NC_001650.1 + 151749 0.71 0.683317
Target:  5'- gGCUcGGGUCcuGGUC-CUGGAUCuGGu -3'
miRNA:   3'- gCGAcCCCAGu-CCAGaGACCUAGuCC- -5'
3588 3' -56.9 NC_001650.1 + 155454 0.66 0.919988
Target:  5'- uGCUGGGcGUaCGGGaCgcacCUGGGggUCAGGu -3'
miRNA:   3'- gCGACCC-CA-GUCCaGa---GACCU--AGUCC- -5'
3588 3' -56.9 NC_001650.1 + 155854 0.68 0.813843
Target:  5'- gGCUGGGGgcguucgCGGGgCUCgUGGugagCGGGg -3'
miRNA:   3'- gCGACCCCa------GUCCaGAG-ACCua--GUCC- -5'
3588 3' -56.9 NC_001650.1 + 158971 0.66 0.919988
Target:  5'- uGCUGGuGGUCaucuuaaggaauGGGUCcggGGAUgAGGa -3'
miRNA:   3'- gCGACC-CCAG------------UCCAGagaCCUAgUCC- -5'
3588 3' -56.9 NC_001650.1 + 168660 0.67 0.869031
Target:  5'- gGCcaaUGGGGagAGGgugggUUGGGUCAGGg -3'
miRNA:   3'- gCG---ACCCCagUCCaga--GACCUAGUCC- -5'
3588 3' -56.9 NC_001650.1 + 171358 0.67 0.889769
Target:  5'- ---aGGGGUCuuuguccgggGGGUCUUUGGGggucCGGGg -3'
miRNA:   3'- gcgaCCCCAG----------UCCAGAGACCUa---GUCC- -5'
3588 3' -56.9 NC_001650.1 + 178066 1.1 0.002935
Target:  5'- gCGCUGGGGUCAGGUCUCUGGAUCAGGc -3'
miRNA:   3'- -GCGACCCCAGUCCAGAGACCUAGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.