miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3588 5' -52.5 NC_001650.1 + 178212 0.67 0.98235
Target:  5'- gGUCCgAgUAGCAUaACCgGAUCgCACCc -3'
miRNA:   3'- -CAGGgUaAUCGUA-UGGgCUGGaGUGG- -5'
3588 5' -52.5 NC_001650.1 + 118107 0.67 0.98235
Target:  5'- uGUCCCcgUacAGCcccgccagGUGCCCG-CC-CACCu -3'
miRNA:   3'- -CAGGGuaA--UCG--------UAUGGGCuGGaGUGG- -5'
3588 5' -52.5 NC_001650.1 + 11505 0.67 0.98235
Target:  5'- gGUCCgAgUAGCAUaACCgGAUCgCACCc -3'
miRNA:   3'- -CAGGgUaAUCGUA-UGGgCUGGaGUGG- -5'
3588 5' -52.5 NC_001650.1 + 82834 0.67 0.975534
Target:  5'- -cCCCAaacucGCAcccgUACaCCGACCUCACg -3'
miRNA:   3'- caGGGUaau--CGU----AUG-GGCUGGAGUGg -5'
3588 5' -52.5 NC_001650.1 + 83156 0.67 0.975534
Target:  5'- cGUCCCuggAGCu--CgUGaACCUCACCa -3'
miRNA:   3'- -CAGGGuaaUCGuauGgGC-UGGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 44183 0.67 0.975534
Target:  5'- uUCCCAUgcuuuUGGUAUGCCUcGCUUCcCCu -3'
miRNA:   3'- cAGGGUA-----AUCGUAUGGGcUGGAGuGG- -5'
3588 5' -52.5 NC_001650.1 + 128772 0.67 0.972883
Target:  5'- aGUCCgCGUUGGCgAUGgCCGccAgCUCGCCc -3'
miRNA:   3'- -CAGG-GUAAUCG-UAUgGGC--UgGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 108634 0.68 0.97003
Target:  5'- aUCCU---GGCcgaccACCCGGCCUCGCg -3'
miRNA:   3'- cAGGGuaaUCGua---UGGGCUGGAGUGg -5'
3588 5' -52.5 NC_001650.1 + 124386 0.68 0.97003
Target:  5'- -gCCCAUgAGCGaggaccGCCCGGCCUC-Cg -3'
miRNA:   3'- caGGGUAaUCGUa-----UGGGCUGGAGuGg -5'
3588 5' -52.5 NC_001650.1 + 82435 0.68 0.97003
Target:  5'- -cCCCGcccGC-UGCCCuGCCUCGCCc -3'
miRNA:   3'- caGGGUaauCGuAUGGGcUGGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 68949 0.68 0.966969
Target:  5'- cUCCC--UGGCuaccacccUGCCCGGCCUgGCUc -3'
miRNA:   3'- cAGGGuaAUCGu-------AUGGGCUGGAgUGG- -5'
3588 5' -52.5 NC_001650.1 + 85203 0.68 0.963694
Target:  5'- gGUCCgAc--GCccgGCUCGGCCUCGCCc -3'
miRNA:   3'- -CAGGgUaauCGua-UGGGCUGGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 131327 0.68 0.960198
Target:  5'- aGUCUCAggGGCGc-CCCGGagggacuccCCUCGCCu -3'
miRNA:   3'- -CAGGGUaaUCGUauGGGCU---------GGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 79234 0.68 0.960198
Target:  5'- cUCCCGggaGGCcucCCCGucuCCUCGCCc -3'
miRNA:   3'- cAGGGUaa-UCGuauGGGCu--GGAGUGG- -5'
3588 5' -52.5 NC_001650.1 + 60095 0.68 0.960198
Target:  5'- -gCCCGccgAGgGUcugGCCCGACC-CGCCg -3'
miRNA:   3'- caGGGUaa-UCgUA---UGGGCUGGaGUGG- -5'
3588 5' -52.5 NC_001650.1 + 137277 0.68 0.960198
Target:  5'- cGUCCCGggcUGGCAgaugaaggACCUGACC--ACCu -3'
miRNA:   3'- -CAGGGUa--AUCGUa-------UGGGCUGGagUGG- -5'
3588 5' -52.5 NC_001650.1 + 15947 0.68 0.960198
Target:  5'- -cCCCA-UAGCuacACCUGGCCUCAg- -3'
miRNA:   3'- caGGGUaAUCGua-UGGGCUGGAGUgg -5'
3588 5' -52.5 NC_001650.1 + 58587 0.68 0.956477
Target:  5'- -cCCCGagAGCcUGCCCGAgCCccauuUCACCu -3'
miRNA:   3'- caGGGUaaUCGuAUGGGCU-GG-----AGUGG- -5'
3588 5' -52.5 NC_001650.1 + 171361 0.68 0.952525
Target:  5'- aUUCCAUggaaaaGGUcgGCCCGGCCcUCugCg -3'
miRNA:   3'- cAGGGUAa-----UCGuaUGGGCUGG-AGugG- -5'
3588 5' -52.5 NC_001650.1 + 4654 0.68 0.952525
Target:  5'- aUUCCAUggaaaaGGUcgGCCCGGCCcUCugCg -3'
miRNA:   3'- cAGGGUAa-----UCGuaUGGGCUGG-AGugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.