miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3589 3' -45.8 NC_001650.1 + 57535 0.66 0.99999
Target:  5'- ---uGAGGCgccgGCUGGGgcugGGgcUGGGc -3'
miRNA:   3'- uuuuCUCCGa---UGACCUaa--UCaaACCU- -5'
3589 3' -45.8 NC_001650.1 + 62131 0.67 0.99995
Target:  5'- cGGAGGAGGCUGuuccCUGGAgcacccagcaaccuaUGGggUGGGa -3'
miRNA:   3'- -UUUUCUCCGAU----GACCUa--------------AUCaaACCU- -5'
3589 3' -45.8 NC_001650.1 + 167361 0.68 0.999662
Target:  5'- gGGGAGGGGCUugUGuGcgUGGgcgGGGg -3'
miRNA:   3'- -UUUUCUCCGAugAC-CuaAUCaaaCCU- -5'
3589 3' -45.8 NC_001650.1 + 654 0.68 0.999662
Target:  5'- gGGGAGGGGCUugUGuGcgUGGgcgGGGg -3'
miRNA:   3'- -UUUUCUCCGAugAC-CuaAUCaaaCCU- -5'
3589 3' -45.8 NC_001650.1 + 178733 0.68 0.999662
Target:  5'- gGAGAGuGGCUAUUGGAUUAugcuagcaGGAg -3'
miRNA:   3'- -UUUUCuCCGAUGACCUAAUcaaa----CCU- -5'
3589 3' -45.8 NC_001650.1 + 12026 0.68 0.999662
Target:  5'- gGAGAGuGGCUAUUGGAUUAugcuagcaGGAg -3'
miRNA:   3'- -UUUUCuCCGAUGACCUAAUcaaa----CCU- -5'
3589 3' -45.8 NC_001650.1 + 43483 0.69 0.999326
Target:  5'- gGGAGGGGGuUUACUGGAaaugGGUgagGGAg -3'
miRNA:   3'- -UUUUCUCC-GAUGACCUaa--UCAaa-CCU- -5'
3589 3' -45.8 NC_001650.1 + 13608 0.69 0.999162
Target:  5'- aAAAAGAGGaguUAUUGGAUUAGUUUu-- -3'
miRNA:   3'- -UUUUCUCCg--AUGACCUAAUCAAAccu -5'
3589 3' -45.8 NC_001650.1 + 180315 0.69 0.999162
Target:  5'- aAAAAGAGGaguUAUUGGAUUAGUUUu-- -3'
miRNA:   3'- -UUUUCUCCg--AUGACCUAAUCAAAccu -5'
3589 3' -45.8 NC_001650.1 + 105121 0.7 0.998454
Target:  5'- cAAAGGAGGCUAUggUGGGUucagUGGUUucUGGu -3'
miRNA:   3'- -UUUUCUCCGAUG--ACCUA----AUCAA--ACCu -5'
3589 3' -45.8 NC_001650.1 + 62385 0.7 0.997742
Target:  5'- -cAGGGGGCUACUcuGUUGGUUggGGAg -3'
miRNA:   3'- uuUUCUCCGAUGAccUAAUCAAa-CCU- -5'
3589 3' -45.8 NC_001650.1 + 12277 1.08 0.032532
Target:  5'- gAAAAGAGGCUACUGGAUUAGUUUGGAu -3'
miRNA:   3'- -UUUUCUCCGAUGACCUAAUCAAACCU- -5'
3589 3' -45.8 NC_001650.1 + 178984 1.08 0.032532
Target:  5'- gAAAAGAGGCUACUGGAUUAGUUUGGAu -3'
miRNA:   3'- -UUUUCUCCGAUGACCUAAUCAAACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.