miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3589 5' -47.7 NC_001650.1 + 178947 1.1 0.016824
Target:  5'- uCCUGCUAGCAUAAUCCAAUAGCCACUc -3'
miRNA:   3'- -GGACGAUCGUAUUAGGUUAUCGGUGA- -5'
3589 5' -47.7 NC_001650.1 + 12240 1.1 0.016824
Target:  5'- uCCUGCUAGCAUAAUCCAAUAGCCACUc -3'
miRNA:   3'- -GGACGAUCGUAUUAGGUUAUCGGUGA- -5'
3589 5' -47.7 NC_001650.1 + 12567 0.78 0.804662
Target:  5'- uCCUGUUAGCAUAAcUCAAUGGCUuuGCUc -3'
miRNA:   3'- -GGACGAUCGUAUUaGGUUAUCGG--UGA- -5'
3589 5' -47.7 NC_001650.1 + 179274 0.78 0.804662
Target:  5'- uCCUGUUAGCAUAAcUCAAUGGCUuuGCUc -3'
miRNA:   3'- -GGACGAUCGUAUUaGGUUAUCGG--UGA- -5'
3589 5' -47.7 NC_001650.1 + 3397 0.77 0.813971
Target:  5'- gCCUGCcaGGCAUgggGAUCCAagAUGGCCACc -3'
miRNA:   3'- -GGACGa-UCGUA---UUAGGU--UAUCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 170104 0.77 0.813971
Target:  5'- gCCUGCcaGGCAUgggGAUCCAagAUGGCCACc -3'
miRNA:   3'- -GGACGa-UCGUA---UUAGGU--UAUCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 170173 0.77 0.849263
Target:  5'- gCCUGCcaGGCAUgggGAUCCAagAUGGCCGCc -3'
miRNA:   3'- -GGACGa-UCGUA---UUAGGU--UAUCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 3466 0.77 0.849263
Target:  5'- gCCUGCcaGGCAUgggGAUCCAagAUGGCCGCc -3'
miRNA:   3'- -GGACGa-UCGUA---UUAGGU--UAUCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 131665 0.75 0.909486
Target:  5'- uCCUGCUGGCgcgGUAggcGUCCAGgacgcccugcacgugGGCCGCUa -3'
miRNA:   3'- -GGACGAUCG---UAU---UAGGUUa--------------UCGGUGA- -5'
3589 5' -47.7 NC_001650.1 + 172196 0.71 0.98667
Target:  5'- aCUGCguaugccaGGCAUgggGAUCCAagAUGGCCGCc -3'
miRNA:   3'- gGACGa-------UCGUA---UUAGGU--UAUCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 5489 0.71 0.98667
Target:  5'- aCUGCguaugccaGGCAUgggGAUCCAagAUGGCCGCc -3'
miRNA:   3'- gGACGa-------UCGUA---UUAGGU--UAUCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 111112 0.7 0.989743
Target:  5'- gCCUGCUcGCccccccAUCCAGUcGCCGCg -3'
miRNA:   3'- -GGACGAuCGuau---UAGGUUAuCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 180285 0.7 0.992233
Target:  5'- gCCUGUUuuguGCAaacAUCCAuaAGCCACUa -3'
miRNA:   3'- -GGACGAu---CGUau-UAGGUuaUCGGUGA- -5'
3589 5' -47.7 NC_001650.1 + 13578 0.7 0.992233
Target:  5'- gCCUGUUuuguGCAaacAUCCAuaAGCCACUa -3'
miRNA:   3'- -GGACGAu---CGUau-UAGGUuaUCGGUGA- -5'
3589 5' -47.7 NC_001650.1 + 36665 0.7 0.993283
Target:  5'- gCCUGCUGGaCGUGG-CCGGgcgggagGGCUACa -3'
miRNA:   3'- -GGACGAUC-GUAUUaGGUUa------UCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 98985 0.7 0.993283
Target:  5'- aCCUggaGCUGGaCGUGAUCCAggAGCaCAUa -3'
miRNA:   3'- -GGA---CGAUC-GUAUUAGGUuaUCG-GUGa -5'
3589 5' -47.7 NC_001650.1 + 26846 0.69 0.995042
Target:  5'- aCCUGCUGcCcgGggCCGAgAGCCACa -3'
miRNA:   3'- -GGACGAUcGuaUuaGGUUaUCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 142339 0.68 0.997865
Target:  5'- cCCgGCUGGaaggaGUGcUCCAggAGCCGCg -3'
miRNA:   3'- -GGaCGAUCg----UAUuAGGUuaUCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 99075 0.68 0.997865
Target:  5'- gCCU-CUGGCA--GUCCAcgcAGCCACa -3'
miRNA:   3'- -GGAcGAUCGUauUAGGUua-UCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 29366 0.68 0.998223
Target:  5'- aCCUGCUcaggcGCAgcGUCCAGggGGCgGCg -3'
miRNA:   3'- -GGACGAu----CGUauUAGGUUa-UCGgUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.