miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3589 5' -47.7 NC_001650.1 + 98985 0.7 0.993283
Target:  5'- aCCUggaGCUGGaCGUGAUCCAggAGCaCAUa -3'
miRNA:   3'- -GGA---CGAUC-GUAUUAGGUuaUCG-GUGa -5'
3589 5' -47.7 NC_001650.1 + 99075 0.68 0.997865
Target:  5'- gCCU-CUGGCA--GUCCAcgcAGCCACa -3'
miRNA:   3'- -GGAcGAUCGUauUAGGUua-UCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 111112 0.7 0.989743
Target:  5'- gCCUGCUcGCccccccAUCCAGUcGCCGCg -3'
miRNA:   3'- -GGACGAuCGuau---UAGGUUAuCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 131665 0.75 0.909486
Target:  5'- uCCUGCUGGCgcgGUAggcGUCCAGgacgcccugcacgugGGCCGCUa -3'
miRNA:   3'- -GGACGAUCG---UAU---UAGGUUa--------------UCGGUGA- -5'
3589 5' -47.7 NC_001650.1 + 138700 0.67 0.999583
Target:  5'- gUCUGCcAGCAUGGccccugucUCCAgcAUGGCCcCUg -3'
miRNA:   3'- -GGACGaUCGUAUU--------AGGU--UAUCGGuGA- -5'
3589 5' -47.7 NC_001650.1 + 142339 0.68 0.997865
Target:  5'- cCCgGCUGGaaggaGUGcUCCAggAGCCGCg -3'
miRNA:   3'- -GGaCGAUCg----UAUuAGGUuaUCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 156478 0.67 0.999478
Target:  5'- cCCUGgUGGCccgcgggcugGUGA-CCGcgGGCCACg -3'
miRNA:   3'- -GGACgAUCG----------UAUUaGGUuaUCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 164370 0.67 0.99935
Target:  5'- uCCUGCUgcgAGUGUGGUCCGc--GCUGCa -3'
miRNA:   3'- -GGACGA---UCGUAUUAGGUuauCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 170104 0.77 0.813971
Target:  5'- gCCUGCcaGGCAUgggGAUCCAagAUGGCCACc -3'
miRNA:   3'- -GGACGa-UCGUA---UUAGGU--UAUCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 170173 0.77 0.849263
Target:  5'- gCCUGCcaGGCAUgggGAUCCAagAUGGCCGCc -3'
miRNA:   3'- -GGACGa-UCGUA---UUAGGU--UAUCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 172196 0.71 0.98667
Target:  5'- aCUGCguaugccaGGCAUgggGAUCCAagAUGGCCGCc -3'
miRNA:   3'- gGACGa-------UCGUA---UUAGGU--UAUCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 175093 0.67 0.99901
Target:  5'- cCCUGCcccuCAUAG-CCAuUGGCCACa -3'
miRNA:   3'- -GGACGauc-GUAUUaGGUuAUCGGUGa -5'
3589 5' -47.7 NC_001650.1 + 178752 0.66 0.999654
Target:  5'- -aUGCUAGCAggagcagUAuagauccaaacuaAUCCAGUAGCCuCUu -3'
miRNA:   3'- ggACGAUCGU-------AU-------------UAGGUUAUCGGuGA- -5'
3589 5' -47.7 NC_001650.1 + 178947 1.1 0.016824
Target:  5'- uCCUGCUAGCAUAAUCCAAUAGCCACUc -3'
miRNA:   3'- -GGACGAUCGUAUUAGGUUAUCGGUGA- -5'
3589 5' -47.7 NC_001650.1 + 179274 0.78 0.804662
Target:  5'- uCCUGUUAGCAUAAcUCAAUGGCUuuGCUc -3'
miRNA:   3'- -GGACGAUCGUAUUaGGUUAUCGG--UGA- -5'
3589 5' -47.7 NC_001650.1 + 180145 0.66 0.9997
Target:  5'- gCCUGaggcacuaucaaaGGCAUAAUCCAAaGGCUAUUu -3'
miRNA:   3'- -GGACga-----------UCGUAUUAGGUUaUCGGUGA- -5'
3589 5' -47.7 NC_001650.1 + 180285 0.7 0.992233
Target:  5'- gCCUGUUuuguGCAaacAUCCAuaAGCCACUa -3'
miRNA:   3'- -GGACGAu---CGUau-UAGGUuaUCGGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.