miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
359 3' -62.9 AC_000011.1 + 3669 0.66 0.249383
Target:  5'- cCGCCGCagCUGCUGcaucugcCGCcagCGCCGUGCGc -3'
miRNA:   3'- -GCGGCG--GACGACc------GCGa--GUGGCGUGC- -5'
359 3' -62.9 AC_000011.1 + 15618 0.66 0.249383
Target:  5'- gGCCGCgUGC-GGuCGCgcacCACCGUcgACGa -3'
miRNA:   3'- gCGGCGgACGaCC-GCGa---GUGGCG--UGC- -5'
359 3' -62.9 AC_000011.1 + 16320 0.67 0.213743
Target:  5'- gCGCCGCCgGggGGCGaaCUCG-CGCACa -3'
miRNA:   3'- -GCGGCGGaCgaCCGC--GAGUgGCGUGc -5'
359 3' -62.9 AC_000011.1 + 15687 0.67 0.208247
Target:  5'- aCGUCGUCgacGgUGGUGCgcgACCGCACGc -3'
miRNA:   3'- -GCGGCGGa--CgACCGCGag-UGGCGUGC- -5'
359 3' -62.9 AC_000011.1 + 24155 0.67 0.202872
Target:  5'- gCGCgGCUgGC-GGUGCUCAaaCGCACGg -3'
miRNA:   3'- -GCGgCGGaCGaCCGCGAGUg-GCGUGC- -5'
359 3' -62.9 AC_000011.1 + 17042 0.67 0.202872
Target:  5'- uGCCGCC--CUGGUGCggagagugUACCGcCGCGg -3'
miRNA:   3'- gCGGCGGacGACCGCGa-------GUGGC-GUGC- -5'
359 3' -62.9 AC_000011.1 + 28403 0.67 0.197619
Target:  5'- uCGCUuacaGCCUGUgcacGGCGCuaaUCACCGCuauCGu -3'
miRNA:   3'- -GCGG----CGGACGa---CCGCG---AGUGGCGu--GC- -5'
359 3' -62.9 AC_000011.1 + 11455 0.67 0.197619
Target:  5'- aGCgGCUUGCUGGUGggguuCUGCACGa -3'
miRNA:   3'- gCGgCGGACGACCGCgagu-GGCGUGC- -5'
359 3' -62.9 AC_000011.1 + 8529 0.68 0.182566
Target:  5'- aGCCGCCccUGCcgcccGGCGCgcguccUCGCCGC-CGc -3'
miRNA:   3'- gCGGCGG--ACGa----CCGCG------AGUGGCGuGC- -5'
359 3' -62.9 AC_000011.1 + 13975 0.68 0.173103
Target:  5'- cCGCCaucGCCUGCUGcaucaCGCUC-UCGUACGa -3'
miRNA:   3'- -GCGG---CGGACGACc----GCGAGuGGCGUGC- -5'
359 3' -62.9 AC_000011.1 + 15863 0.68 0.173103
Target:  5'- gCGCCGCgCgcaugGCgggGGUGCUCcgguGCCGC-CGg -3'
miRNA:   3'- -GCGGCG-Ga----CGa--CCGCGAG----UGGCGuGC- -5'
359 3' -62.9 AC_000011.1 + 21619 0.69 0.159727
Target:  5'- gCGCCGCaaccaGgaGGCGCUCuACCGCu-- -3'
miRNA:   3'- -GCGGCGga---CgaCCGCGAG-UGGCGugc -5'
359 3' -62.9 AC_000011.1 + 23892 0.69 0.147292
Target:  5'- uCGCagguGCCauuggGCUGGCGCUUgggggGCaCGCGCGg -3'
miRNA:   3'- -GCGg---CGGa----CGACCGCGAG-----UG-GCGUGC- -5'
359 3' -62.9 AC_000011.1 + 33978 0.69 0.143347
Target:  5'- cCGCaUGCgCUGCU-GCGCcCGCCGCACc -3'
miRNA:   3'- -GCG-GCG-GACGAcCGCGaGUGGCGUGc -5'
359 3' -62.9 AC_000011.1 + 10994 0.7 0.132084
Target:  5'- gGCgCGCCUGggGGCGUcgUCGCCGgaGCGg -3'
miRNA:   3'- gCG-GCGGACgaCCGCG--AGUGGCg-UGC- -5'
359 3' -62.9 AC_000011.1 + 17318 0.7 0.132084
Target:  5'- -aCCGCUUGCugaUGGCGCgcCGCCGC-CGg -3'
miRNA:   3'- gcGGCGGACG---ACCGCGa-GUGGCGuGC- -5'
359 3' -62.9 AC_000011.1 + 9940 0.72 0.089344
Target:  5'- uCGUCGCCgacCUGGCGCUCGuCCagccccaGCGCGg -3'
miRNA:   3'- -GCGGCGGac-GACCGCGAGU-GG-------CGUGC- -5'
359 3' -62.9 AC_000011.1 + 3897 0.72 0.087115
Target:  5'- aGCCaCCUGCUGGgucaGCUCGCCcagGCGCu -3'
miRNA:   3'- gCGGcGGACGACCg---CGAGUGG---CGUGc -5'
359 3' -62.9 AC_000011.1 + 15817 0.74 0.062043
Target:  5'- cCGCCGCCgGCucuUGGCGCgggcgUACCgGCGCGc -3'
miRNA:   3'- -GCGGCGGaCG---ACCGCGa----GUGG-CGUGC- -5'
359 3' -62.9 AC_000011.1 + 15950 0.74 0.060301
Target:  5'- uGCCGgC-GCUGGCGCcugaaGCCGCGCGu -3'
miRNA:   3'- gCGGCgGaCGACCGCGag---UGGCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.