miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3590 3' -41.9 NC_001650.1 + 13661 0.68 1
Target:  5'- -----cCCGGCCAGUgggaugcaugGGUGUcUGAGg -3'
miRNA:   3'- cauuuuGGUCGGUCAa---------UCACAaAUUC- -5'
3590 3' -41.9 NC_001650.1 + 180368 0.68 1
Target:  5'- -----cCCGGCCAGUgggaugcaugGGUGUcUGAGg -3'
miRNA:   3'- cauuuuGGUCGGUCAa---------UCACAaAUUC- -5'
3590 3' -41.9 NC_001650.1 + 16789 0.69 1
Target:  5'- uGUGG--UCAGCCAuGUUGGUGggUGGGc -3'
miRNA:   3'- -CAUUuuGGUCGGU-CAAUCACaaAUUC- -5'
3590 3' -41.9 NC_001650.1 + 183496 0.69 1
Target:  5'- uGUGG--UCAGCCAuGUUGGUGggUGGGc -3'
miRNA:   3'- -CAUUuuGGUCGGU-CAAUCACaaAUUC- -5'
3590 3' -41.9 NC_001650.1 + 44307 0.66 1
Target:  5'- -aGAGACUcucuaAGCUAGUUAGUGa-UAAGu -3'
miRNA:   3'- caUUUUGG-----UCGGUCAAUCACaaAUUC- -5'
3590 3' -41.9 NC_001650.1 + 121718 0.67 1
Target:  5'- ---uGACCAGCCGGUgggagaugcUGGUGg----- -3'
miRNA:   3'- cauuUUGGUCGGUCA---------AUCACaaauuc -5'
3590 3' -41.9 NC_001650.1 + 72134 0.67 1
Target:  5'- -aAAGGCCAGCCGcccGGUGUUg--- -3'
miRNA:   3'- caUUUUGGUCGGUcaaUCACAAauuc -5'
3590 3' -41.9 NC_001650.1 + 86195 0.66 1
Target:  5'- -gAGGGCCAGCCcaucaacgucAGggAGgaGUUUGAGa -3'
miRNA:   3'- caUUUUGGUCGG----------UCaaUCa-CAAAUUC- -5'
3590 3' -41.9 NC_001650.1 + 96677 0.66 1
Target:  5'- ---cGACC-GUCAGUaUAGUGUUUAAu -3'
miRNA:   3'- cauuUUGGuCGGUCA-AUCACAAAUUc -5'
3590 3' -41.9 NC_001650.1 + 110482 0.67 1
Target:  5'- gGUGGAGCCGGCCAGgcaagAGg------- -3'
miRNA:   3'- -CAUUUUGGUCGGUCaa---UCacaaauuc -5'
3590 3' -41.9 NC_001650.1 + 142228 0.67 1
Target:  5'- -cAAGAUauGCCAGUUAGUGUa---- -3'
miRNA:   3'- caUUUUGguCGGUCAAUCACAaauuc -5'
3590 3' -41.9 NC_001650.1 + 178188 0.67 1
Target:  5'- -gGGAGCCu-CCGGcucgAGUGUUUAAGg -3'
miRNA:   3'- caUUUUGGucGGUCaa--UCACAAAUUC- -5'
3590 3' -41.9 NC_001650.1 + 11481 0.67 1
Target:  5'- -gGGAGCCu-CCGGcucgAGUGUUUAAGg -3'
miRNA:   3'- caUUUUGGucGGUCaa--UCACAAAUUC- -5'
3590 3' -41.9 NC_001650.1 + 145714 0.67 1
Target:  5'- cGUAGAACUGGCaCAGgaGGUGgc-AGGg -3'
miRNA:   3'- -CAUUUUGGUCG-GUCaaUCACaaaUUC- -5'
3590 3' -41.9 NC_001650.1 + 15577 0.68 1
Target:  5'- ----cGCuCGGCUGGUUGGUGggUGGGu -3'
miRNA:   3'- cauuuUG-GUCGGUCAAUCACaaAUUC- -5'
3590 3' -41.9 NC_001650.1 + 182284 0.68 1
Target:  5'- ----cGCuCGGCUGGUUGGUGggUGGGu -3'
miRNA:   3'- cauuuUG-GUCGGUCAAUCACaaAUUC- -5'
3590 3' -41.9 NC_001650.1 + 178918 0.69 0.999999
Target:  5'- aGUAAAGCCAGCUGGUUA-UGcugaUAAGa -3'
miRNA:   3'- -CAUUUUGGUCGGUCAAUcACaa--AUUC- -5'
3590 3' -41.9 NC_001650.1 + 12211 0.69 0.999999
Target:  5'- aGUAAAGCCAGCUGGUUA-UGcugaUAAGa -3'
miRNA:   3'- -CAUUUUGGUCGGUCAAUcACaa--AUUC- -5'
3590 3' -41.9 NC_001650.1 + 1641 0.71 0.999982
Target:  5'- -gGGGGCCGGCCuugUGGUGUgaggUAAGc -3'
miRNA:   3'- caUUUUGGUCGGucaAUCACAa---AUUC- -5'
3590 3' -41.9 NC_001650.1 + 168348 0.71 0.999982
Target:  5'- -gGGGGCCGGCCuugUGGUGUgaggUAAGc -3'
miRNA:   3'- caUUUUGGUCGGucaAUCACAa---AUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.