miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3591 3' -49.2 NC_001650.1 + 121710 0.66 0.999031
Target:  5'- cGGUGGGAGaUGcu-GGUggGGCUgCAGc -3'
miRNA:   3'- -CUACCCUCaACaauCCAa-CCGAaGUC- -5'
3591 3' -49.2 NC_001650.1 + 112424 0.66 0.998818
Target:  5'- --gGGGAGUggguUGUUGGGgggucaugGGUggUCAGg -3'
miRNA:   3'- cuaCCCUCA----ACAAUCCaa------CCGa-AGUC- -5'
3591 3' -49.2 NC_001650.1 + 11653 0.66 0.998818
Target:  5'- cGGUGGGgaGGUUGUaguUGGGUgGGCUg--- -3'
miRNA:   3'- -CUACCC--UCAACA---AUCCAaCCGAaguc -5'
3591 3' -49.2 NC_001650.1 + 178360 0.66 0.998818
Target:  5'- cGGUGGGgaGGUUGUaguUGGGUgGGCUg--- -3'
miRNA:   3'- -CUACCC--UCAACA---AUCCAaCCGAaguc -5'
3591 3' -49.2 NC_001650.1 + 1946 0.66 0.998565
Target:  5'- --gGGGAGagGgUGGGUUGGg-UCAGg -3'
miRNA:   3'- cuaCCCUCaaCaAUCCAACCgaAGUC- -5'
3591 3' -49.2 NC_001650.1 + 168653 0.66 0.998565
Target:  5'- --gGGGAGagGgUGGGUUGGg-UCAGg -3'
miRNA:   3'- cuaCCCUCaaCaAUCCAACCgaAGUC- -5'
3591 3' -49.2 NC_001650.1 + 69415 0.67 0.996515
Target:  5'- -cUGGGGGUUGaugAGGgucaGGCU-CAGg -3'
miRNA:   3'- cuACCCUCAACaa-UCCaa--CCGAaGUC- -5'
3591 3' -49.2 NC_001650.1 + 94634 0.67 0.9959
Target:  5'- aGGUGGGuGaUGUUGGGUgguaugGGCgccgccUCAGc -3'
miRNA:   3'- -CUACCCuCaACAAUCCAa-----CCGa-----AGUC- -5'
3591 3' -49.2 NC_001650.1 + 1817 0.68 0.991364
Target:  5'- aAUGGGGGUaGggGGGUggGGUUUUGGa -3'
miRNA:   3'- cUACCCUCAaCaaUCCAa-CCGAAGUC- -5'
3591 3' -49.2 NC_001650.1 + 14083 1.08 0.015176
Target:  5'- gGAUGGGAGUUGUUAGGUUGGCUUCAGc -3'
miRNA:   3'- -CUACCCUCAACAAUCCAACCGAAGUC- -5'
3591 3' -49.2 NC_001650.1 + 180790 1.08 0.015176
Target:  5'- gGAUGGGAGUUGUUAGGUUGGCUUCAGc -3'
miRNA:   3'- -CUACCCUCAACAAUCCAACCGAAGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.