miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3591 5' -54 NC_001650.1 + 157550 0.67 0.960486
Target:  5'- aUCUGA-GACAGcGCCUccuguGGCAGCUUg -3'
miRNA:   3'- gAGACUgUUGUCuUGGG-----CCGUCGAGg -5'
3591 5' -54 NC_001650.1 + 53706 0.67 0.952926
Target:  5'- gCUCUcGACcaauCAGAGCgCGGCcgagagGGCUCUg -3'
miRNA:   3'- -GAGA-CUGuu--GUCUUGgGCCG------UCGAGG- -5'
3591 5' -54 NC_001650.1 + 54407 0.67 0.948803
Target:  5'- -cCUGA--GCcuGGGcgGCCCGGgAGCUCCa -3'
miRNA:   3'- gaGACUguUG--UCU--UGGGCCgUCGAGG- -5'
3591 5' -54 NC_001650.1 + 53937 0.67 0.960486
Target:  5'- aUCUGAUuggucCAGAGCCCucucGGCcgcGCUCUg -3'
miRNA:   3'- gAGACUGuu---GUCUUGGG----CCGu--CGAGG- -5'
3591 5' -54 NC_001650.1 + 26230 0.67 0.956819
Target:  5'- uUUUGACucuccacAUAGAACuuGGCuAGCUCg -3'
miRNA:   3'- gAGACUGu------UGUCUUGggCCG-UCGAGg -5'
3591 5' -54 NC_001650.1 + 157235 0.67 0.939857
Target:  5'- -gCUGgugaggcaGCAGCAGGGCgUGGgGGCUCUg -3'
miRNA:   3'- gaGAC--------UGUUGUCUUGgGCCgUCGAGG- -5'
3591 5' -54 NC_001650.1 + 125212 0.67 0.948803
Target:  5'- cCUCUGGCGAUcgAGAGCCUcucGCAGauggUCCu -3'
miRNA:   3'- -GAGACUGUUG--UCUUGGGc--CGUCg---AGG- -5'
3591 5' -54 NC_001650.1 + 57813 0.67 0.948803
Target:  5'- gCUCaagGACAucaAGAACUCGcaGCAGUUCCc -3'
miRNA:   3'- -GAGa--CUGUug-UCUUGGGC--CGUCGAGG- -5'
3591 5' -54 NC_001650.1 + 132062 0.67 0.939857
Target:  5'- gUCUGACccccACAGGGCUugggugacguCGGCGGCcggCCa -3'
miRNA:   3'- gAGACUGu---UGUCUUGG----------GCCGUCGa--GG- -5'
3591 5' -54 NC_001650.1 + 155279 0.67 0.952926
Target:  5'- gCUCcaggGACGGCAGGcACCUGGgccuGCUCUg -3'
miRNA:   3'- -GAGa---CUGUUGUCU-UGGGCCgu--CGAGG- -5'
3591 5' -54 NC_001650.1 + 28004 0.67 0.952926
Target:  5'- -gCUGGCcgGGCAgGAGCCgCGGCAcaGCUCg -3'
miRNA:   3'- gaGACUG--UUGU-CUUGG-GCCGU--CGAGg -5'
3591 5' -54 NC_001650.1 + 112408 0.67 0.939857
Target:  5'- -gUUGACAACAG-ACCCaauaGCGGC-CCu -3'
miRNA:   3'- gaGACUGUUGUCuUGGGc---CGUCGaGG- -5'
3591 5' -54 NC_001650.1 + 99679 0.67 0.960486
Target:  5'- -aCUGACAGCAacAACCaUGGCuGCUgCCg -3'
miRNA:   3'- gaGACUGUUGUc-UUGG-GCCGuCGA-GG- -5'
3591 5' -54 NC_001650.1 + 37525 0.67 0.947521
Target:  5'- gCUCUGgGCggUAGc-CCCGGCAGUggauaaacagggagUCCg -3'
miRNA:   3'- -GAGAC-UGuuGUCuuGGGCCGUCG--------------AGG- -5'
3591 5' -54 NC_001650.1 + 130749 0.67 0.952926
Target:  5'- -cCUGAgGAUcuccucGCCCaGCAGCUCCa -3'
miRNA:   3'- gaGACUgUUGucu---UGGGcCGUCGAGG- -5'
3591 5' -54 NC_001650.1 + 76456 0.67 0.948803
Target:  5'- aUCUGGCAuguaaauGGACUgguaCGGCGGCUCa -3'
miRNA:   3'- gAGACUGUugu----CUUGG----GCCGUCGAGg -5'
3591 5' -54 NC_001650.1 + 180551 0.67 0.960486
Target:  5'- gUCUGGCAGCGu--CCCccucagcaGGCAGCgCCu -3'
miRNA:   3'- gAGACUGUUGUcuuGGG--------CCGUCGaGG- -5'
3591 5' -54 NC_001650.1 + 41615 0.67 0.960486
Target:  5'- ---gGuuuCAGgGGGGCCCGcGUGGCUCCa -3'
miRNA:   3'- gagaCu--GUUgUCUUGGGC-CGUCGAGG- -5'
3591 5' -54 NC_001650.1 + 13844 0.67 0.960486
Target:  5'- gUCUGGCAGCGu--CCCccucagcaGGCAGCgCCu -3'
miRNA:   3'- gAGACUGUUGUcuuGGG--------CCGUCGaGG- -5'
3591 5' -54 NC_001650.1 + 135454 0.67 0.939857
Target:  5'- -cCUGACugAGCuGGGCCCGGgCcuguacuGCUCCa -3'
miRNA:   3'- gaGACUG--UUGuCUUGGGCC-Gu------CGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.