Results 41 - 60 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
3591 | 5' | -54 | NC_001650.1 | + | 14644 | 0.68 | 0.935029 |
Target: 5'- uUCUcACAGUGGAACCCGGgCGGCcggCCu -3' miRNA: 3'- gAGAcUGUUGUCUUGGGCC-GUCGa--GG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 139338 | 0.68 | 0.929963 |
Target: 5'- uUUUGACAACcuAGGGCCUaccagcgaGGCGGC-CCu -3' miRNA: 3'- gAGACUGUUG--UCUUGGG--------CCGUCGaGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 26462 | 0.68 | 0.929963 |
Target: 5'- ---aGGcCAGCGuGGGCCCGuGCGGCUUCg -3' miRNA: 3'- gagaCU-GUUGU-CUUGGGC-CGUCGAGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 92926 | 0.68 | 0.924656 |
Target: 5'- ---aGugGGCAGGAUCCGGgGGCUg- -3' miRNA: 3'- gagaCugUUGUCUUGGGCCgUCGAgg -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 85180 | 0.68 | 0.91911 |
Target: 5'- gUCaGGCAGCAGAACuCCaGCaagaAGCUCUu -3' miRNA: 3'- gAGaCUGUUGUCUUG-GGcCG----UCGAGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 22659 | 0.68 | 0.91911 |
Target: 5'- cCUCgcACGACAGcGgCCGGCGGCUggCCu -3' miRNA: 3'- -GAGacUGUUGUCuUgGGCCGUCGA--GG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 134499 | 0.68 | 0.918542 |
Target: 5'- gUCUGGCccuGgGGGGCCUGGCGGgcggggaaucgucCUCCu -3' miRNA: 3'- gAGACUGu--UgUCUUGGGCCGUC-------------GAGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 109901 | 0.68 | 0.91911 |
Target: 5'- gUCUGGCcucucgUAGGACCUgGGCAGCUgCu -3' miRNA: 3'- gAGACUGuu----GUCUUGGG-CCGUCGAgG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 19476 | 0.68 | 0.924656 |
Target: 5'- aCUCUGACuccugagagGACAGAgGCCCGGUugucugggagAGCUg- -3' miRNA: 3'- -GAGACUG---------UUGUCU-UGGGCCG----------UCGAgg -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 181351 | 0.68 | 0.935029 |
Target: 5'- uUCUcACAGUGGAACCCGGgCGGCcggCCu -3' miRNA: 3'- gAGAcUGUUGUCUUGGGCC-GUCGa--GG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 4218 | 0.68 | 0.929963 |
Target: 5'- uUCUGGCcaAugGGGACUCuguccgugGGCgAGCUCCg -3' miRNA: 3'- gAGACUG--UugUCUUGGG--------CCG-UCGAGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 170925 | 0.68 | 0.929963 |
Target: 5'- uUCUGGCcaAugGGGACUCuguccgugGGCgAGCUCCg -3' miRNA: 3'- gAGACUG--UugUCUUGGG--------CCG-UCGAGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 135987 | 0.69 | 0.907302 |
Target: 5'- -cCUGGCcuuuCAGAGCauGGCGGcCUCCa -3' miRNA: 3'- gaGACUGuu--GUCUUGggCCGUC-GAGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 34684 | 0.69 | 0.901043 |
Target: 5'- uUCUGACAcCGGGugcgcGCCCGGCuccugGGCcgCCc -3' miRNA: 3'- gAGACUGUuGUCU-----UGGGCCG-----UCGa-GG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 69068 | 0.69 | 0.894552 |
Target: 5'- gUCUGGCGGCcauGGGCCCGggcgcGCGGCacgUCCc -3' miRNA: 3'- gAGACUGUUGu--CUUGGGC-----CGUCG---AGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 78819 | 0.69 | 0.894552 |
Target: 5'- gUCUGccGCAGCGGcGCCCGcaCAGcCUCCa -3' miRNA: 3'- gAGAC--UGUUGUCuUGGGCc-GUC-GAGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 53189 | 0.69 | 0.88783 |
Target: 5'- cCUCggGAC--CGGAGCCCGGCucGCgUCCc -3' miRNA: 3'- -GAGa-CUGuuGUCUUGGGCCGu-CG-AGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 118228 | 0.69 | 0.880882 |
Target: 5'- gCUCUGGCAGCgcucGGggUUCucgGGCAGCUUg -3' miRNA: 3'- -GAGACUGUUG----UCuuGGG---CCGUCGAGg -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 80330 | 0.69 | 0.880175 |
Target: 5'- uUCUGAUcuAcuuugggcccuucGCGGAGCCCaGGCGGC-CCu -3' miRNA: 3'- gAGACUG--U-------------UGUCUUGGG-CCGUCGaGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 23224 | 0.7 | 0.873713 |
Target: 5'- -cCUGGCGaggugcccgaGCAGGcugACCCGGCAGC-Cg -3' miRNA: 3'- gaGACUGU----------UGUCU---UGGGCCGUCGaGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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