miRNA display CGI


Results 21 - 40 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3591 5' -54 NC_001650.1 + 82743 0.71 0.826354
Target:  5'- ---gGGCAGCAGcagggGGCCCGGguGC-CCg -3'
miRNA:   3'- gagaCUGUUGUC-----UUGGGCCguCGaGG- -5'
3591 5' -54 NC_001650.1 + 116819 0.7 0.85873
Target:  5'- gCUCUGACucaggagaccuGGCAGAACa-GGUGGUUCCc -3'
miRNA:   3'- -GAGACUG-----------UUGUCUUGggCCGUCGAGG- -5'
3591 5' -54 NC_001650.1 + 110711 0.7 0.85641
Target:  5'- -gCUGACAuugcuCGGGggguccggccucuuGCCUGGCcGGCUCCa -3'
miRNA:   3'- gaGACUGUu----GUCU--------------UGGGCCG-UCGAGG- -5'
3591 5' -54 NC_001650.1 + 23224 0.7 0.873713
Target:  5'- -cCUGGCGaggugcccgaGCAGGcugACCCGGCAGC-Cg -3'
miRNA:   3'- gaGACUGU----------UGUCU---UGGGCCGUCGaGg -5'
3591 5' -54 NC_001650.1 + 118481 0.7 0.866327
Target:  5'- gCUCUGGCAcgaGCAGAuagaggaguuCCUGGCGGC-Ca -3'
miRNA:   3'- -GAGACUGU---UGUCUu---------GGGCCGUCGaGg -5'
3591 5' -54 NC_001650.1 + 68952 0.7 0.873713
Target:  5'- -cCUGGCuACcacccuGCCCGGCcuGGCUCCg -3'
miRNA:   3'- gaGACUGuUGucu---UGGGCCG--UCGAGG- -5'
3591 5' -54 NC_001650.1 + 63100 0.7 0.866327
Target:  5'- uCUCUGGgGgucGCGcc-CCCGGguGCUCCg -3'
miRNA:   3'- -GAGACUgU---UGUcuuGGGCCguCGAGG- -5'
3591 5' -54 NC_001650.1 + 135987 0.69 0.907302
Target:  5'- -cCUGGCcuuuCAGAGCauGGCGGcCUCCa -3'
miRNA:   3'- gaGACUGuu--GUCUUGggCCGUC-GAGG- -5'
3591 5' -54 NC_001650.1 + 78819 0.69 0.894552
Target:  5'- gUCUGccGCAGCGGcGCCCGcaCAGcCUCCa -3'
miRNA:   3'- gAGAC--UGUUGUCuUGGGCc-GUC-GAGG- -5'
3591 5' -54 NC_001650.1 + 69068 0.69 0.894552
Target:  5'- gUCUGGCGGCcauGGGCCCGggcgcGCGGCacgUCCc -3'
miRNA:   3'- gAGACUGUUGu--CUUGGGC-----CGUCG---AGG- -5'
3591 5' -54 NC_001650.1 + 34684 0.69 0.901043
Target:  5'- uUCUGACAcCGGGugcgcGCCCGGCuccugGGCcgCCc -3'
miRNA:   3'- gAGACUGUuGUCU-----UGGGCCG-----UCGa-GG- -5'
3591 5' -54 NC_001650.1 + 80330 0.69 0.880175
Target:  5'- uUCUGAUcuAcuuugggcccuucGCGGAGCCCaGGCGGC-CCu -3'
miRNA:   3'- gAGACUG--U-------------UGUCUUGGG-CCGUCGaGG- -5'
3591 5' -54 NC_001650.1 + 53189 0.69 0.88783
Target:  5'- cCUCggGAC--CGGAGCCCGGCucGCgUCCc -3'
miRNA:   3'- -GAGa-CUGuuGUCUUGGGCCGu-CG-AGG- -5'
3591 5' -54 NC_001650.1 + 118228 0.69 0.880882
Target:  5'- gCUCUGGCAGCgcucGGggUUCucgGGCAGCUUg -3'
miRNA:   3'- -GAGACUGUUG----UCuuGGG---CCGUCGAGg -5'
3591 5' -54 NC_001650.1 + 22659 0.68 0.91911
Target:  5'- cCUCgcACGACAGcGgCCGGCGGCUggCCu -3'
miRNA:   3'- -GAGacUGUUGUCuUgGGCCGUCGA--GG- -5'
3591 5' -54 NC_001650.1 + 26462 0.68 0.929963
Target:  5'- ---aGGcCAGCGuGGGCCCGuGCGGCUUCg -3'
miRNA:   3'- gagaCU-GUUGU-CUUGGGC-CGUCGAGG- -5'
3591 5' -54 NC_001650.1 + 92926 0.68 0.924656
Target:  5'- ---aGugGGCAGGAUCCGGgGGCUg- -3'
miRNA:   3'- gagaCugUUGUCUUGGGCCgUCGAgg -5'
3591 5' -54 NC_001650.1 + 139338 0.68 0.929963
Target:  5'- uUUUGACAACcuAGGGCCUaccagcgaGGCGGC-CCu -3'
miRNA:   3'- gAGACUGUUG--UCUUGGG--------CCGUCGaGG- -5'
3591 5' -54 NC_001650.1 + 14644 0.68 0.935029
Target:  5'- uUCUcACAGUGGAACCCGGgCGGCcggCCu -3'
miRNA:   3'- gAGAcUGUUGUCUUGGGCC-GUCGa--GG- -5'
3591 5' -54 NC_001650.1 + 181351 0.68 0.935029
Target:  5'- uUCUcACAGUGGAACCCGGgCGGCcggCCu -3'
miRNA:   3'- gAGAcUGUUGUCUUGGGCC-GUCGa--GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.