miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3591 5' -54 NC_001650.1 + 22659 0.68 0.91911
Target:  5'- cCUCgcACGACAGcGgCCGGCGGCUggCCu -3'
miRNA:   3'- -GAGacUGUUGUCuUgGGCCGUCGA--GG- -5'
3591 5' -54 NC_001650.1 + 134499 0.68 0.918542
Target:  5'- gUCUGGCccuGgGGGGCCUGGCGGgcggggaaucgucCUCCu -3'
miRNA:   3'- gAGACUGu--UgUCUUGGGCCGUC-------------GAGG- -5'
3591 5' -54 NC_001650.1 + 109901 0.68 0.91911
Target:  5'- gUCUGGCcucucgUAGGACCUgGGCAGCUgCu -3'
miRNA:   3'- gAGACUGuu----GUCUUGGG-CCGUCGAgG- -5'
3591 5' -54 NC_001650.1 + 19476 0.68 0.924656
Target:  5'- aCUCUGACuccugagagGACAGAgGCCCGGUugucugggagAGCUg- -3'
miRNA:   3'- -GAGACUG---------UUGUCU-UGGGCCG----------UCGAgg -5'
3591 5' -54 NC_001650.1 + 181351 0.68 0.935029
Target:  5'- uUCUcACAGUGGAACCCGGgCGGCcggCCu -3'
miRNA:   3'- gAGAcUGUUGUCUUGGGCC-GUCGa--GG- -5'
3591 5' -54 NC_001650.1 + 4218 0.68 0.929963
Target:  5'- uUCUGGCcaAugGGGACUCuguccgugGGCgAGCUCCg -3'
miRNA:   3'- gAGACUG--UugUCUUGGG--------CCG-UCGAGG- -5'
3591 5' -54 NC_001650.1 + 107314 0.67 0.939857
Target:  5'- uUCUG-CAGCAGGucccccacggagACCCccgggGGCAGCcCCa -3'
miRNA:   3'- gAGACuGUUGUCU------------UGGG-----CCGUCGaGG- -5'
3591 5' -54 NC_001650.1 + 157550 0.67 0.960486
Target:  5'- aUCUGA-GACAGcGCCUccuguGGCAGCUUg -3'
miRNA:   3'- gAGACUgUUGUCuUGGG-----CCGUCGAGg -5'
3591 5' -54 NC_001650.1 + 157235 0.67 0.939857
Target:  5'- -gCUGgugaggcaGCAGCAGGGCgUGGgGGCUCUg -3'
miRNA:   3'- gaGAC--------UGUUGUCUUGgGCCgUCGAGG- -5'
3591 5' -54 NC_001650.1 + 135454 0.67 0.939857
Target:  5'- -cCUGACugAGCuGGGCCCGGgCcuguacuGCUCCa -3'
miRNA:   3'- gaGACUG--UUGuCUUGGGCC-Gu------CGAGG- -5'
3591 5' -54 NC_001650.1 + 112408 0.67 0.939857
Target:  5'- -gUUGACAACAG-ACCCaauaGCGGC-CCu -3'
miRNA:   3'- gaGACUGUUGUCuUGGGc---CGUCGaGG- -5'
3591 5' -54 NC_001650.1 + 132062 0.67 0.939857
Target:  5'- gUCUGACccccACAGGGCUugggugacguCGGCGGCcggCCa -3'
miRNA:   3'- gAGACUGu---UGUCUUGG----------GCCGUCGa--GG- -5'
3591 5' -54 NC_001650.1 + 53706 0.67 0.952926
Target:  5'- gCUCUcGACcaauCAGAGCgCGGCcgagagGGCUCUg -3'
miRNA:   3'- -GAGA-CUGuu--GUCUUGgGCCG------UCGAGG- -5'
3591 5' -54 NC_001650.1 + 37525 0.67 0.947521
Target:  5'- gCUCUGgGCggUAGc-CCCGGCAGUggauaaacagggagUCCg -3'
miRNA:   3'- -GAGAC-UGuuGUCuuGGGCCGUCG--------------AGG- -5'
3591 5' -54 NC_001650.1 + 75045 0.67 0.948803
Target:  5'- cCUCUGAaacGCAGAgcgggaccGCCUGGCucGCgUCCu -3'
miRNA:   3'- -GAGACUgu-UGUCU--------UGGGCCGu-CG-AGG- -5'
3591 5' -54 NC_001650.1 + 151532 0.67 0.948803
Target:  5'- gCUCUGGCu-CAGGuucaaGCuCUGGUucaGGCUCCg -3'
miRNA:   3'- -GAGACUGuuGUCU-----UG-GGCCG---UCGAGG- -5'
3591 5' -54 NC_001650.1 + 151490 0.67 0.948803
Target:  5'- gCUCUGGCu-CAGGuucaaGCuCUGGUucaGGCUCCg -3'
miRNA:   3'- -GAGACUGuuGUCU-----UG-GGCCG---UCGAGG- -5'
3591 5' -54 NC_001650.1 + 151448 0.67 0.948803
Target:  5'- gCUCUGGCu-CAGGuucaaGCuCUGGUucaGGCUCCg -3'
miRNA:   3'- -GAGACUGuuGUCU-----UG-GGCCG---UCGAGG- -5'
3591 5' -54 NC_001650.1 + 97728 0.67 0.939857
Target:  5'- aUCUGGC--CGGucGCCCugcaGCAGCUCCu -3'
miRNA:   3'- gAGACUGuuGUCu-UGGGc---CGUCGAGG- -5'
3591 5' -54 NC_001650.1 + 108626 0.67 0.960486
Target:  5'- uCUCUGACAuccugGCcGAccACCCGGCcucGCgCCu -3'
miRNA:   3'- -GAGACUGU-----UGuCU--UGGGCCGu--CGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.