miRNA display CGI


Results 61 - 80 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3591 5' -54 NC_001650.1 + 132062 0.67 0.939857
Target:  5'- gUCUGACccccACAGGGCUugggugacguCGGCGGCcggCCa -3'
miRNA:   3'- gAGACUGu---UGUCUUGG----------GCCGUCGa--GG- -5'
3591 5' -54 NC_001650.1 + 134499 0.68 0.918542
Target:  5'- gUCUGGCccuGgGGGGCCUGGCGGgcggggaaucgucCUCCu -3'
miRNA:   3'- gAGACUGu--UgUCUUGGGCCGUC-------------GAGG- -5'
3591 5' -54 NC_001650.1 + 135294 0.71 0.826354
Target:  5'- cCUCcu-CAGCAGAACCUGGguGCagucgUCCc -3'
miRNA:   3'- -GAGacuGUUGUCUUGGGCCguCG-----AGG- -5'
3591 5' -54 NC_001650.1 + 135454 0.67 0.939857
Target:  5'- -cCUGACugAGCuGGGCCCGGgCcuguacuGCUCCa -3'
miRNA:   3'- gaGACUG--UUGuCUUGGGCC-Gu------CGAGG- -5'
3591 5' -54 NC_001650.1 + 135987 0.69 0.907302
Target:  5'- -cCUGGCcuuuCAGAGCauGGCGGcCUCCa -3'
miRNA:   3'- gaGACUGuu--GUCUUGggCCGUC-GAGG- -5'
3591 5' -54 NC_001650.1 + 138050 0.75 0.571988
Target:  5'- -aCUGGaucaucucaGACAGGGCCUGGCAGC-CCa -3'
miRNA:   3'- gaGACUg--------UUGUCUUGGGCCGUCGaGG- -5'
3591 5' -54 NC_001650.1 + 139338 0.68 0.929963
Target:  5'- uUUUGACAACcuAGGGCCUaccagcgaGGCGGC-CCu -3'
miRNA:   3'- gAGACUGUUG--UCUUGGG--------CCGUCGaGG- -5'
3591 5' -54 NC_001650.1 + 140254 0.71 0.8178
Target:  5'- -cCUGGgcuCAGCccGGCCCGGgAGCUCCa -3'
miRNA:   3'- gaGACU---GUUGucUUGGGCCgUCGAGG- -5'
3591 5' -54 NC_001650.1 + 140954 0.67 0.952926
Target:  5'- gCUCUcGACcaauCAGAGCgCGGCugagagGGCUCUg -3'
miRNA:   3'- -GAGA-CUGuu--GUCUUGgGCCG------UCGAGG- -5'
3591 5' -54 NC_001650.1 + 145739 0.71 0.791153
Target:  5'- ---gGGCGGCAGGGCCauggcgGGCAGgUCCg -3'
miRNA:   3'- gagaCUGUUGUCUUGGg-----CCGUCgAGG- -5'
3591 5' -54 NC_001650.1 + 151448 0.67 0.948803
Target:  5'- gCUCUGGCu-CAGGuucaaGCuCUGGUucaGGCUCCg -3'
miRNA:   3'- -GAGACUGuuGUCU-----UG-GGCCG---UCGAGG- -5'
3591 5' -54 NC_001650.1 + 151490 0.67 0.948803
Target:  5'- gCUCUGGCu-CAGGuucaaGCuCUGGUucaGGCUCCg -3'
miRNA:   3'- -GAGACUGuuGUCU-----UG-GGCCG---UCGAGG- -5'
3591 5' -54 NC_001650.1 + 151532 0.67 0.948803
Target:  5'- gCUCUGGCu-CAGGuucaaGCuCUGGUucaGGCUCCg -3'
miRNA:   3'- -GAGACUGuuGUCU-----UG-GGCCG---UCGAGG- -5'
3591 5' -54 NC_001650.1 + 152733 0.75 0.592298
Target:  5'- aCUCUGAaaaGAgGGGACCUGGCAGg-CCa -3'
miRNA:   3'- -GAGACUg--UUgUCUUGGGCCGUCgaGG- -5'
3591 5' -54 NC_001650.1 + 155279 0.67 0.952926
Target:  5'- gCUCcaggGACGGCAGGcACCUGGgccuGCUCUg -3'
miRNA:   3'- -GAGa---CUGUUGUCU-UGGGCCgu--CGAGG- -5'
3591 5' -54 NC_001650.1 + 157235 0.67 0.939857
Target:  5'- -gCUGgugaggcaGCAGCAGGGCgUGGgGGCUCUg -3'
miRNA:   3'- gaGAC--------UGUUGUCUUGgGCCgUCGAGG- -5'
3591 5' -54 NC_001650.1 + 157550 0.67 0.960486
Target:  5'- aUCUGA-GACAGcGCCUccuguGGCAGCUUg -3'
miRNA:   3'- gAGACUgUUGUCuUGGG-----CCGUCGAGg -5'
3591 5' -54 NC_001650.1 + 158775 0.66 0.970184
Target:  5'- --aUGACcaccAGCAGGuGCUCGGCGucGCUCCu -3'
miRNA:   3'- gagACUG----UUGUCU-UGGGCCGU--CGAGG- -5'
3591 5' -54 NC_001650.1 + 158915 0.75 0.571988
Target:  5'- uUCgUGGCGAUAGGggauGCCCGGCAGCagcugggugacaUCCg -3'
miRNA:   3'- gAG-ACUGUUGUCU----UGGGCCGUCG------------AGG- -5'
3591 5' -54 NC_001650.1 + 169752 0.71 0.826354
Target:  5'- -cCUGGCAACAGcugacgucgccgGGCCCGGaGGcCUCCc -3'
miRNA:   3'- gaGACUGUUGUC------------UUGGGCCgUC-GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.