miRNA display CGI


Results 61 - 80 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3591 5' -54 NC_001650.1 + 170925 0.68 0.929963
Target:  5'- uUCUGGCcaAugGGGACUCuguccgugGGCgAGCUCCg -3'
miRNA:   3'- gAGACUG--UugUCUUGGG--------CCG-UCGAGG- -5'
3591 5' -54 NC_001650.1 + 19476 0.68 0.924656
Target:  5'- aCUCUGACuccugagagGACAGAgGCCCGGUugucugggagAGCUg- -3'
miRNA:   3'- -GAGACUG---------UUGUCU-UGGGCCG----------UCGAgg -5'
3591 5' -54 NC_001650.1 + 110711 0.7 0.85641
Target:  5'- -gCUGACAuugcuCGGGggguccggccucuuGCCUGGCcGGCUCCa -3'
miRNA:   3'- gaGACUGUu----GUCU--------------UGGGCCG-UCGAGG- -5'
3591 5' -54 NC_001650.1 + 82743 0.71 0.826354
Target:  5'- ---gGGCAGCAGcagggGGCCCGGguGC-CCg -3'
miRNA:   3'- gagaCUGUUGUC-----UUGGGCCguCGaGG- -5'
3591 5' -54 NC_001650.1 + 127347 0.71 0.8178
Target:  5'- uUCgcaGGCucCGGGGCCCGGUGGuCUCCc -3'
miRNA:   3'- gAGa--CUGuuGUCUUGGGCCGUC-GAGG- -5'
3591 5' -54 NC_001650.1 + 127477 0.72 0.781972
Target:  5'- uUCUGAgu-CAGAugcgguCCCGGCgcGGCUCCu -3'
miRNA:   3'- gAGACUguuGUCUu-----GGGCCG--UCGAGG- -5'
3591 5' -54 NC_001650.1 + 89124 0.73 0.728326
Target:  5'- -cCUGGcCAGCAGGGCCCugaagaacucgggcaGGCAGCaguUCCa -3'
miRNA:   3'- gaGACU-GUUGUCUUGGG---------------CCGUCG---AGG- -5'
3591 5' -54 NC_001650.1 + 61536 0.74 0.653691
Target:  5'- -gCUGAgGGCGGAGCUgGGCaaccugucccAGCUCCa -3'
miRNA:   3'- gaGACUgUUGUCUUGGgCCG----------UCGAGG- -5'
3591 5' -54 NC_001650.1 + 152733 0.75 0.592298
Target:  5'- aCUCUGAaaaGAgGGGACCUGGCAGg-CCa -3'
miRNA:   3'- -GAGACUg--UUgUCUUGGGCCGUCgaGG- -5'
3591 5' -54 NC_001650.1 + 14047 1.11 0.003919
Target:  5'- gCUCUGACAACAGAACCCGGCAGCUCCc -3'
miRNA:   3'- -GAGACUGUUGUCUUGGGCCGUCGAGG- -5'
3591 5' -54 NC_001650.1 + 116819 0.7 0.85873
Target:  5'- gCUCUGACucaggagaccuGGCAGAACa-GGUGGUUCCc -3'
miRNA:   3'- -GAGACUG-----------UUGUCUUGggCCGUCGAGG- -5'
3591 5' -54 NC_001650.1 + 118481 0.7 0.866327
Target:  5'- gCUCUGGCAcgaGCAGAuagaggaguuCCUGGCGGC-Ca -3'
miRNA:   3'- -GAGACUGU---UGUCUu---------GGGCCGUCGaGg -5'
3591 5' -54 NC_001650.1 + 109901 0.68 0.91911
Target:  5'- gUCUGGCcucucgUAGGACCUgGGCAGCUgCu -3'
miRNA:   3'- gAGACUGuu----GUCUUGGG-CCGUCGAgG- -5'
3591 5' -54 NC_001650.1 + 134499 0.68 0.918542
Target:  5'- gUCUGGCccuGgGGGGCCUGGCGGgcggggaaucgucCUCCu -3'
miRNA:   3'- gAGACUGu--UgUCUUGGGCCGUC-------------GAGG- -5'
3591 5' -54 NC_001650.1 + 135987 0.69 0.907302
Target:  5'- -cCUGGCcuuuCAGAGCauGGCGGcCUCCa -3'
miRNA:   3'- gaGACUGuu--GUCUUGggCCGUC-GAGG- -5'
3591 5' -54 NC_001650.1 + 34684 0.69 0.901043
Target:  5'- uUCUGACAcCGGGugcgcGCCCGGCuccugGGCcgCCc -3'
miRNA:   3'- gAGACUGUuGUCU-----UGGGCCG-----UCGa-GG- -5'
3591 5' -54 NC_001650.1 + 69068 0.69 0.894552
Target:  5'- gUCUGGCGGCcauGGGCCCGggcgcGCGGCacgUCCc -3'
miRNA:   3'- gAGACUGUUGu--CUUGGGC-----CGUCG---AGG- -5'
3591 5' -54 NC_001650.1 + 78819 0.69 0.894552
Target:  5'- gUCUGccGCAGCGGcGCCCGcaCAGcCUCCa -3'
miRNA:   3'- gAGAC--UGUUGUCuUGGGCc-GUC-GAGG- -5'
3591 5' -54 NC_001650.1 + 23224 0.7 0.873713
Target:  5'- -cCUGGCGaggugcccgaGCAGGcugACCCGGCAGC-Cg -3'
miRNA:   3'- gaGACUGU----------UGUCU---UGGGCCGUCGaGg -5'
3591 5' -54 NC_001650.1 + 63100 0.7 0.866327
Target:  5'- uCUCUGGgGgucGCGcc-CCCGGguGCUCCg -3'
miRNA:   3'- -GAGACUgU---UGUcuuGGGCCguCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.