miRNA display CGI


Results 21 - 40 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3591 5' -54 NC_001650.1 + 157235 0.67 0.939857
Target:  5'- -gCUGgugaggcaGCAGCAGGGCgUGGgGGCUCUg -3'
miRNA:   3'- gaGAC--------UGUUGUCUUGgGCCgUCGAGG- -5'
3591 5' -54 NC_001650.1 + 170925 0.68 0.929963
Target:  5'- uUCUGGCcaAugGGGACUCuguccgugGGCgAGCUCCg -3'
miRNA:   3'- gAGACUG--UugUCUUGGG--------CCG-UCGAGG- -5'
3591 5' -54 NC_001650.1 + 63100 0.7 0.866327
Target:  5'- uCUCUGGgGgucGCGcc-CCCGGguGCUCCg -3'
miRNA:   3'- -GAGACUgU---UGUcuuGGGCCguCGAGG- -5'
3591 5' -54 NC_001650.1 + 89124 0.73 0.728326
Target:  5'- -cCUGGcCAGCAGGGCCCugaagaacucgggcaGGCAGCaguUCCa -3'
miRNA:   3'- gaGACU-GUUGUCUUGGG---------------CCGUCG---AGG- -5'
3591 5' -54 NC_001650.1 + 130749 0.67 0.952926
Target:  5'- -cCUGAgGAUcuccucGCCCaGCAGCUCCa -3'
miRNA:   3'- gaGACUgUUGucu---UGGGcCGUCGAGG- -5'
3591 5' -54 NC_001650.1 + 125212 0.67 0.948803
Target:  5'- cCUCUGGCGAUcgAGAGCCUcucGCAGauggUCCu -3'
miRNA:   3'- -GAGACUGUUG--UCUUGGGc--CGUCg---AGG- -5'
3591 5' -54 NC_001650.1 + 109901 0.68 0.91911
Target:  5'- gUCUGGCcucucgUAGGACCUgGGCAGCUgCu -3'
miRNA:   3'- gAGACUGuu----GUCUUGGG-CCGUCGAgG- -5'
3591 5' -54 NC_001650.1 + 61536 0.74 0.653691
Target:  5'- -gCUGAgGGCGGAGCUgGGCaaccugucccAGCUCCa -3'
miRNA:   3'- gaGACUgUUGUCUUGGgCCG----------UCGAGG- -5'
3591 5' -54 NC_001650.1 + 37525 0.67 0.947521
Target:  5'- gCUCUGgGCggUAGc-CCCGGCAGUggauaaacagggagUCCg -3'
miRNA:   3'- -GAGAC-UGuuGUCuuGGGCCGUCG--------------AGG- -5'
3591 5' -54 NC_001650.1 + 152733 0.75 0.592298
Target:  5'- aCUCUGAaaaGAgGGGACCUGGCAGg-CCa -3'
miRNA:   3'- -GAGACUg--UUgUCUUGGGCCGUCgaGG- -5'
3591 5' -54 NC_001650.1 + 19476 0.68 0.924656
Target:  5'- aCUCUGACuccugagagGACAGAgGCCCGGUugucugggagAGCUg- -3'
miRNA:   3'- -GAGACUG---------UUGUCU-UGGGCCG----------UCGAgg -5'
3591 5' -54 NC_001650.1 + 135454 0.67 0.939857
Target:  5'- -cCUGACugAGCuGGGCCCGGgCcuguacuGCUCCa -3'
miRNA:   3'- gaGACUG--UUGuCUUGGGCC-Gu------CGAGG- -5'
3591 5' -54 NC_001650.1 + 34684 0.69 0.901043
Target:  5'- uUCUGACAcCGGGugcgcGCCCGGCuccugGGCcgCCc -3'
miRNA:   3'- gAGACUGUuGUCU-----UGGGCCG-----UCGa-GG- -5'
3591 5' -54 NC_001650.1 + 23224 0.7 0.873713
Target:  5'- -cCUGGCGaggugcccgaGCAGGcugACCCGGCAGC-Cg -3'
miRNA:   3'- gaGACUGU----------UGUCU---UGGGCCGUCGaGg -5'
3591 5' -54 NC_001650.1 + 110711 0.7 0.85641
Target:  5'- -gCUGACAuugcuCGGGggguccggccucuuGCCUGGCcGGCUCCa -3'
miRNA:   3'- gaGACUGUu----GUCU--------------UGGGCCG-UCGAGG- -5'
3591 5' -54 NC_001650.1 + 127477 0.72 0.781972
Target:  5'- uUCUGAgu-CAGAugcgguCCCGGCgcGGCUCCu -3'
miRNA:   3'- gAGACUguuGUCUu-----GGGCCG--UCGAGG- -5'
3591 5' -54 NC_001650.1 + 41615 0.67 0.960486
Target:  5'- ---gGuuuCAGgGGGGCCCGcGUGGCUCCa -3'
miRNA:   3'- gagaCu--GUUgUCUUGGGC-CGUCGAGG- -5'
3591 5' -54 NC_001650.1 + 26230 0.67 0.956819
Target:  5'- uUUUGACucuccacAUAGAACuuGGCuAGCUCg -3'
miRNA:   3'- gAGACUGu------UGUCUUGggCCG-UCGAGg -5'
3591 5' -54 NC_001650.1 + 155279 0.67 0.952926
Target:  5'- gCUCcaggGACGGCAGGcACCUGGgccuGCUCUg -3'
miRNA:   3'- -GAGa---CUGUUGUCU-UGGGCCgu--CGAGG- -5'
3591 5' -54 NC_001650.1 + 54407 0.67 0.948803
Target:  5'- -cCUGA--GCcuGGGcgGCCCGGgAGCUCCa -3'
miRNA:   3'- gaGACUguUG--UCU--UGGGCCgUCGAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.