miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3591 5' -54 NC_001650.1 + 157235 0.67 0.939857
Target:  5'- -gCUGgugaggcaGCAGCAGGGCgUGGgGGCUCUg -3'
miRNA:   3'- gaGAC--------UGUUGUCUUGgGCCgUCGAGG- -5'
3591 5' -54 NC_001650.1 + 135454 0.67 0.939857
Target:  5'- -cCUGACugAGCuGGGCCCGGgCcuguacuGCUCCa -3'
miRNA:   3'- gaGACUG--UUGuCUUGGGCC-Gu------CGAGG- -5'
3591 5' -54 NC_001650.1 + 41615 0.67 0.960486
Target:  5'- ---gGuuuCAGgGGGGCCCGcGUGGCUCCa -3'
miRNA:   3'- gagaCu--GUUgUCUUGGGC-CGUCGAGG- -5'
3591 5' -54 NC_001650.1 + 180551 0.67 0.960486
Target:  5'- gUCUGGCAGCGu--CCCccucagcaGGCAGCgCCu -3'
miRNA:   3'- gAGACUGUUGUcuuGGG--------CCGUCGaGG- -5'
3591 5' -54 NC_001650.1 + 81528 0.66 0.975619
Target:  5'- uCUUUGACAu--GGGCCgggaGGC-GCUCCa -3'
miRNA:   3'- -GAGACUGUuguCUUGGg---CCGuCGAGG- -5'
3591 5' -54 NC_001650.1 + 102469 0.66 0.973
Target:  5'- gCUCUGcuGCAGCAccuGCgCCGGCuGCgCCg -3'
miRNA:   3'- -GAGAC--UGUUGUcu-UG-GGCCGuCGaGG- -5'
3591 5' -54 NC_001650.1 + 3126 0.72 0.734228
Target:  5'- -cCUGGCAACAGAugacGCagaCGGCcacccGGCUCCc -3'
miRNA:   3'- gaGACUGUUGUCU----UGg--GCCG-----UCGAGG- -5'
3591 5' -54 NC_001650.1 + 53706 0.67 0.952926
Target:  5'- gCUCUcGACcaauCAGAGCgCGGCcgagagGGCUCUg -3'
miRNA:   3'- -GAGA-CUGuu--GUCUUGgGCCG------UCGAGG- -5'
3591 5' -54 NC_001650.1 + 158915 0.75 0.571988
Target:  5'- uUCgUGGCGAUAGGggauGCCCGGCAGCagcugggugacaUCCg -3'
miRNA:   3'- gAG-ACUGUUGUCU----UGGGCCGUCG------------AGG- -5'
3591 5' -54 NC_001650.1 + 169833 0.72 0.734228
Target:  5'- -cCUGGCAACAGAugacGCagaCGGCcacccGGCUCCc -3'
miRNA:   3'- gaGACUGUUGUCU----UGg--GCCG-----UCGAGG- -5'
3591 5' -54 NC_001650.1 + 3045 0.71 0.826354
Target:  5'- -cCUGGCAACAGcugacgucgccgGGCCCGGaGGcCUCCc -3'
miRNA:   3'- gaGACUGUUGUC------------UUGGGCCgUC-GAGG- -5'
3591 5' -54 NC_001650.1 + 151532 0.67 0.948803
Target:  5'- gCUCUGGCu-CAGGuucaaGCuCUGGUucaGGCUCCg -3'
miRNA:   3'- -GAGACUGuuGUCU-----UG-GGCCG---UCGAGG- -5'
3591 5' -54 NC_001650.1 + 151490 0.67 0.948803
Target:  5'- gCUCUGGCu-CAGGuucaaGCuCUGGUucaGGCUCCg -3'
miRNA:   3'- -GAGACUGuuGUCU-----UG-GGCCG---UCGAGG- -5'
3591 5' -54 NC_001650.1 + 151448 0.67 0.948803
Target:  5'- gCUCUGGCu-CAGGuucaaGCuCUGGUucaGGCUCCg -3'
miRNA:   3'- -GAGACUGuuGUCU-----UG-GGCCG---UCGAGG- -5'
3591 5' -54 NC_001650.1 + 97728 0.67 0.939857
Target:  5'- aUCUGGC--CGGucGCCCugcaGCAGCUCCu -3'
miRNA:   3'- gAGACUGuuGUCu-UGGGc---CGUCGAGG- -5'
3591 5' -54 NC_001650.1 + 107314 0.67 0.939857
Target:  5'- uUCUG-CAGCAGGucccccacggagACCCccgggGGCAGCcCCa -3'
miRNA:   3'- gAGACuGUUGUCU------------UGGG-----CCGUCGaGG- -5'
3591 5' -54 NC_001650.1 + 181351 0.68 0.935029
Target:  5'- uUCUcACAGUGGAACCCGGgCGGCcggCCu -3'
miRNA:   3'- gAGAcUGUUGUCUUGGGCC-GUCGa--GG- -5'
3591 5' -54 NC_001650.1 + 80330 0.69 0.880175
Target:  5'- uUCUGAUcuAcuuugggcccuucGCGGAGCCCaGGCGGC-CCu -3'
miRNA:   3'- gAGACUG--U-------------UGUCUUGGG-CCGUCGaGG- -5'
3591 5' -54 NC_001650.1 + 68952 0.7 0.873713
Target:  5'- -cCUGGCuACcacccuGCCCGGCcuGGCUCCg -3'
miRNA:   3'- gaGACUGuUGucu---UGGGCCG--UCGAGG- -5'
3591 5' -54 NC_001650.1 + 169752 0.71 0.826354
Target:  5'- -cCUGGCAACAGcugacgucgccgGGCCCGGaGGcCUCCc -3'
miRNA:   3'- gaGACUGUUGUC------------UUGGGCCgUC-GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.