Results 61 - 80 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3591 | 5' | -54 | NC_001650.1 | + | 92926 | 0.68 | 0.924656 |
Target: 5'- ---aGugGGCAGGAUCCGGgGGCUg- -3' miRNA: 3'- gagaCugUUGUCUUGGGCCgUCGAgg -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 26462 | 0.68 | 0.929963 |
Target: 5'- ---aGGcCAGCGuGGGCCCGuGCGGCUUCg -3' miRNA: 3'- gagaCU-GUUGU-CUUGGGC-CGUCGAGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 108626 | 0.67 | 0.960486 |
Target: 5'- uCUCUGACAuccugGCcGAccACCCGGCcucGCgCCu -3' miRNA: 3'- -GAGACUGU-----UGuCU--UGGGCCGu--CGaGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 157550 | 0.67 | 0.960486 |
Target: 5'- aUCUGA-GACAGcGCCUccuguGGCAGCUUg -3' miRNA: 3'- gAGACUgUUGUCuUGGG-----CCGUCGAGg -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 14980 | 0.66 | 0.967163 |
Target: 5'- -cCUGGCAACGcgcGGCCCGcGCGacGCUUCa -3' miRNA: 3'- gaGACUGUUGUc--UUGGGC-CGU--CGAGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 181687 | 0.66 | 0.967163 |
Target: 5'- -cCUGGCAACGcgcGGCCCGcGCGacGCUUCa -3' miRNA: 3'- gaGACUGUUGUc--UUGGGC-CGU--CGAGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 158775 | 0.66 | 0.970184 |
Target: 5'- --aUGACcaccAGCAGGuGCUCGGCGucGCUCCu -3' miRNA: 3'- gagACUG----UUGUCU-UGGGCCGU--CGAGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 18497 | 0.66 | 0.973 |
Target: 5'- -aCUGGCAACAGAuCCUuuGGaaggGGUUCCc -3' miRNA: 3'- gaGACUGUUGUCUuGGG--CCg---UCGAGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 130474 | 0.66 | 0.973 |
Target: 5'- gUCUGGCugcACAGGACCUucaaGGCccuGCUgCCc -3' miRNA: 3'- gAGACUGu--UGUCUUGGG----CCGu--CGA-GG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 28500 | 0.66 | 0.975619 |
Target: 5'- uCUUUGACGu--GGACUCGGCcGC-CCg -3' miRNA: 3'- -GAGACUGUuguCUUGGGCCGuCGaGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 75045 | 0.67 | 0.948803 |
Target: 5'- cCUCUGAaacGCAGAgcgggaccGCCUGGCucGCgUCCu -3' miRNA: 3'- -GAGACUgu-UGUCU--------UGGGCCGu-CG-AGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 53706 | 0.67 | 0.952926 |
Target: 5'- gCUCUcGACcaauCAGAGCgCGGCcgagagGGCUCUg -3' miRNA: 3'- -GAGA-CUGuu--GUCUUGgGCCG------UCGAGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 139338 | 0.68 | 0.929963 |
Target: 5'- uUUUGACAACcuAGGGCCUaccagcgaGGCGGC-CCu -3' miRNA: 3'- gAGACUGUUG--UCUUGGG--------CCGUCGaGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 14644 | 0.68 | 0.935029 |
Target: 5'- uUCUcACAGUGGAACCCGGgCGGCcggCCu -3' miRNA: 3'- gAGAcUGUUGUCUUGGGCC-GUCGa--GG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 181351 | 0.68 | 0.935029 |
Target: 5'- uUCUcACAGUGGAACCCGGgCGGCcggCCu -3' miRNA: 3'- gAGAcUGUUGUCUUGGGCC-GUCGa--GG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 107314 | 0.67 | 0.939857 |
Target: 5'- uUCUG-CAGCAGGucccccacggagACCCccgggGGCAGCcCCa -3' miRNA: 3'- gAGACuGUUGUCU------------UGGG-----CCGUCGaGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 97728 | 0.67 | 0.939857 |
Target: 5'- aUCUGGC--CGGucGCCCugcaGCAGCUCCu -3' miRNA: 3'- gAGACUGuuGUCu-UGGGc---CGUCGAGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 151448 | 0.67 | 0.948803 |
Target: 5'- gCUCUGGCu-CAGGuucaaGCuCUGGUucaGGCUCCg -3' miRNA: 3'- -GAGACUGuuGUCU-----UG-GGCCG---UCGAGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 151490 | 0.67 | 0.948803 |
Target: 5'- gCUCUGGCu-CAGGuucaaGCuCUGGUucaGGCUCCg -3' miRNA: 3'- -GAGACUGuuGUCU-----UG-GGCCG---UCGAGG- -5' |
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3591 | 5' | -54 | NC_001650.1 | + | 151532 | 0.67 | 0.948803 |
Target: 5'- gCUCUGGCu-CAGGuucaaGCuCUGGUucaGGCUCCg -3' miRNA: 3'- -GAGACUGuuGUCU-----UG-GGCCG---UCGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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