Results 21 - 40 of 86 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3591 | 5' | -54 | NC_001650.1 | + | 130749 | 0.67 | 0.952926 |
Target: 5'- -cCUGAgGAUcuccucGCCCaGCAGCUCCa -3' miRNA: 3'- gaGACUgUUGucu---UGGGcCGUCGAGG- -5' |
|||||||
3591 | 5' | -54 | NC_001650.1 | + | 53706 | 0.67 | 0.952926 |
Target: 5'- gCUCUcGACcaauCAGAGCgCGGCcgagagGGCUCUg -3' miRNA: 3'- -GAGA-CUGuu--GUCUUGgGCCG------UCGAGG- -5' |
|||||||
3591 | 5' | -54 | NC_001650.1 | + | 28004 | 0.67 | 0.952926 |
Target: 5'- -gCUGGCcgGGCAgGAGCCgCGGCAcaGCUCg -3' miRNA: 3'- gaGACUG--UUGU-CUUGG-GCCGU--CGAGg -5' |
|||||||
3591 | 5' | -54 | NC_001650.1 | + | 155279 | 0.67 | 0.952926 |
Target: 5'- gCUCcaggGACGGCAGGcACCUGGgccuGCUCUg -3' miRNA: 3'- -GAGa---CUGUUGUCU-UGGGCCgu--CGAGG- -5' |
|||||||
3591 | 5' | -54 | NC_001650.1 | + | 140954 | 0.67 | 0.952926 |
Target: 5'- gCUCUcGACcaauCAGAGCgCGGCugagagGGCUCUg -3' miRNA: 3'- -GAGA-CUGuu--GUCUUGgGCCG------UCGAGG- -5' |
|||||||
3591 | 5' | -54 | NC_001650.1 | + | 76456 | 0.67 | 0.948803 |
Target: 5'- aUCUGGCAuguaaauGGACUgguaCGGCGGCUCa -3' miRNA: 3'- gAGACUGUugu----CUUGG----GCCGUCGAGg -5' |
|||||||
3591 | 5' | -54 | NC_001650.1 | + | 125212 | 0.67 | 0.948803 |
Target: 5'- cCUCUGGCGAUcgAGAGCCUcucGCAGauggUCCu -3' miRNA: 3'- -GAGACUGUUG--UCUUGGGc--CGUCg---AGG- -5' |
|||||||
3591 | 5' | -54 | NC_001650.1 | + | 54407 | 0.67 | 0.948803 |
Target: 5'- -cCUGA--GCcuGGGcgGCCCGGgAGCUCCa -3' miRNA: 3'- gaGACUguUG--UCU--UGGGCCgUCGAGG- -5' |
|||||||
3591 | 5' | -54 | NC_001650.1 | + | 75045 | 0.67 | 0.948803 |
Target: 5'- cCUCUGAaacGCAGAgcgggaccGCCUGGCucGCgUCCu -3' miRNA: 3'- -GAGACUgu-UGUCU--------UGGGCCGu-CG-AGG- -5' |
|||||||
3591 | 5' | -54 | NC_001650.1 | + | 151532 | 0.67 | 0.948803 |
Target: 5'- gCUCUGGCu-CAGGuucaaGCuCUGGUucaGGCUCCg -3' miRNA: 3'- -GAGACUGuuGUCU-----UG-GGCCG---UCGAGG- -5' |
|||||||
3591 | 5' | -54 | NC_001650.1 | + | 151490 | 0.67 | 0.948803 |
Target: 5'- gCUCUGGCu-CAGGuucaaGCuCUGGUucaGGCUCCg -3' miRNA: 3'- -GAGACUGuuGUCU-----UG-GGCCG---UCGAGG- -5' |
|||||||
3591 | 5' | -54 | NC_001650.1 | + | 151448 | 0.67 | 0.948803 |
Target: 5'- gCUCUGGCu-CAGGuucaaGCuCUGGUucaGGCUCCg -3' miRNA: 3'- -GAGACUGuuGUCU-----UG-GGCCG---UCGAGG- -5' |
|||||||
3591 | 5' | -54 | NC_001650.1 | + | 57813 | 0.67 | 0.948803 |
Target: 5'- gCUCaagGACAucaAGAACUCGcaGCAGUUCCc -3' miRNA: 3'- -GAGa--CUGUug-UCUUGGGC--CGUCGAGG- -5' |
|||||||
3591 | 5' | -54 | NC_001650.1 | + | 37525 | 0.67 | 0.947521 |
Target: 5'- gCUCUGgGCggUAGc-CCCGGCAGUggauaaacagggagUCCg -3' miRNA: 3'- -GAGAC-UGuuGUCuuGGGCCGUCG--------------AGG- -5' |
|||||||
3591 | 5' | -54 | NC_001650.1 | + | 157235 | 0.67 | 0.939857 |
Target: 5'- -gCUGgugaggcaGCAGCAGGGCgUGGgGGCUCUg -3' miRNA: 3'- gaGAC--------UGUUGUCUUGgGCCgUCGAGG- -5' |
|||||||
3591 | 5' | -54 | NC_001650.1 | + | 135454 | 0.67 | 0.939857 |
Target: 5'- -cCUGACugAGCuGGGCCCGGgCcuguacuGCUCCa -3' miRNA: 3'- gaGACUG--UUGuCUUGGGCC-Gu------CGAGG- -5' |
|||||||
3591 | 5' | -54 | NC_001650.1 | + | 132062 | 0.67 | 0.939857 |
Target: 5'- gUCUGACccccACAGGGCUugggugacguCGGCGGCcggCCa -3' miRNA: 3'- gAGACUGu---UGUCUUGG----------GCCGUCGa--GG- -5' |
|||||||
3591 | 5' | -54 | NC_001650.1 | + | 107314 | 0.67 | 0.939857 |
Target: 5'- uUCUG-CAGCAGGucccccacggagACCCccgggGGCAGCcCCa -3' miRNA: 3'- gAGACuGUUGUCU------------UGGG-----CCGUCGaGG- -5' |
|||||||
3591 | 5' | -54 | NC_001650.1 | + | 97728 | 0.67 | 0.939857 |
Target: 5'- aUCUGGC--CGGucGCCCugcaGCAGCUCCu -3' miRNA: 3'- gAGACUGuuGUCu-UGGGc---CGUCGAGG- -5' |
|||||||
3591 | 5' | -54 | NC_001650.1 | + | 112408 | 0.67 | 0.939857 |
Target: 5'- -gUUGACAACAG-ACCCaauaGCGGC-CCu -3' miRNA: 3'- gaGACUGUUGUCuUGGGc---CGUCGaGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home