miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3592 3' -53 NC_001650.1 + 117873 0.66 0.984131
Target:  5'- aGGuGGAGGUgaacucguGGGgcuGCUGCACCAc--- -3'
miRNA:   3'- -CC-CCUCCA--------CCCac-UGAUGUGGUuauu -5'
3592 3' -53 NC_001650.1 + 70791 0.66 0.982391
Target:  5'- gGGGGAGGUGGuG-GACgggguacuggagacCACCGAc-- -3'
miRNA:   3'- -CCCCUCCACC-CaCUGau------------GUGGUUauu -5'
3592 3' -53 NC_001650.1 + 155621 0.66 0.982189
Target:  5'- gGGGGAggagaGGUGGGgaggGGCcuCACCGAc-- -3'
miRNA:   3'- -CCCCU-----CCACCCa---CUGauGUGGUUauu -5'
3592 3' -53 NC_001650.1 + 6888 0.66 0.982189
Target:  5'- gGGGGccgAGG-GGGU-ACUACcaugGCCAAUGAa -3'
miRNA:   3'- -CCCC---UCCaCCCAcUGAUG----UGGUUAUU- -5'
3592 3' -53 NC_001650.1 + 173595 0.66 0.982189
Target:  5'- gGGGGccgAGG-GGGU-ACUACcaugGCCAAUGAa -3'
miRNA:   3'- -CCCC---UCCaCCCAcUGAUG----UGGUUAUU- -5'
3592 3' -53 NC_001650.1 + 124897 0.66 0.982189
Target:  5'- aGGGaGAGGgGGGaGACgcggGCACCGc--- -3'
miRNA:   3'- -CCC-CUCCaCCCaCUGa---UGUGGUuauu -5'
3592 3' -53 NC_001650.1 + 34654 0.66 0.982189
Target:  5'- gGGGGuGGUGGGUaccagcGcCUACAgCGAg-- -3'
miRNA:   3'- -CCCCuCCACCCA------CuGAUGUgGUUauu -5'
3592 3' -53 NC_001650.1 + 106980 0.66 0.982189
Target:  5'- aGGGGAGGggggaauguggGGGUGugUACguguACUAc--- -3'
miRNA:   3'- -CCCCUCCa----------CCCACugAUG----UGGUuauu -5'
3592 3' -53 NC_001650.1 + 91051 0.66 0.979176
Target:  5'- uGGGGGcGGUGGGguacuccuucuugGGC-ACGCCcGUAAa -3'
miRNA:   3'- -CCCCU-CCACCCa------------CUGaUGUGGuUAUU- -5'
3592 3' -53 NC_001650.1 + 56286 0.66 0.977776
Target:  5'- gGGGGGGGUGGuGccUGGCgcGCGCCc---- -3'
miRNA:   3'- -CCCCUCCACC-C--ACUGa-UGUGGuuauu -5'
3592 3' -53 NC_001650.1 + 53087 0.66 0.972605
Target:  5'- cGGGGAcGG-GGGUGguuuuGCgACGCCAAa-- -3'
miRNA:   3'- -CCCCU-CCaCCCAC-----UGaUGUGGUUauu -5'
3592 3' -53 NC_001650.1 + 181767 0.66 0.972605
Target:  5'- cGGGGAGGcGGccGGCUGCACa----- -3'
miRNA:   3'- -CCCCUCCaCCcaCUGAUGUGguuauu -5'
3592 3' -53 NC_001650.1 + 41614 0.66 0.972605
Target:  5'- cGGGGcccgguuGGUGGGUGugUGuguCCAAa-- -3'
miRNA:   3'- -CCCCu------CCACCCACugAUgu-GGUUauu -5'
3592 3' -53 NC_001650.1 + 27222 0.66 0.972605
Target:  5'- aGGGGGGcGGGcGACUGCAgCCu---- -3'
miRNA:   3'- cCCCUCCaCCCaCUGAUGU-GGuuauu -5'
3592 3' -53 NC_001650.1 + 15060 0.66 0.972605
Target:  5'- cGGGGAGGcGGccGGCUGCACa----- -3'
miRNA:   3'- -CCCCUCCaCCcaCUGAUGUGguuauu -5'
3592 3' -53 NC_001650.1 + 109121 0.67 0.966617
Target:  5'- gGGGGAGGUGGacgaGGCggcGCACCc---- -3'
miRNA:   3'- -CCCCUCCACCca--CUGa--UGUGGuuauu -5'
3592 3' -53 NC_001650.1 + 126783 0.67 0.9633
Target:  5'- gGGGGAGGgaugGGGcGACgACACUc---- -3'
miRNA:   3'- -CCCCUCCa---CCCaCUGaUGUGGuuauu -5'
3592 3' -53 NC_001650.1 + 82722 0.67 0.95976
Target:  5'- aGGGGcGGUGGaUGACgcggGCGCCu---- -3'
miRNA:   3'- -CCCCuCCACCcACUGa---UGUGGuuauu -5'
3592 3' -53 NC_001650.1 + 8779 0.67 0.95976
Target:  5'- gGGGGAGcGUGGGgGugUGagggACCGAUu- -3'
miRNA:   3'- -CCCCUC-CACCCaCugAUg---UGGUUAuu -5'
3592 3' -53 NC_001650.1 + 175485 0.67 0.95976
Target:  5'- gGGGGAGcGUGGGgGugUGagggACCGAUu- -3'
miRNA:   3'- -CCCCUC-CACCCaCugAUg---UGGUUAuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.