Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3592 | 3' | -53 | NC_001650.1 | + | 182762 | 0.67 | 0.955991 |
Target: 5'- uGGGuAGGUGGGUGGguggccacaacCUGCuCCAAUc- -3' miRNA: 3'- cCCC-UCCACCCACU-----------GAUGuGGUUAuu -5' |
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3592 | 3' | -53 | NC_001650.1 | + | 182556 | 1.08 | 0.006952 |
Target: 5'- uGGGGAGGUGGGUGACUACACCAAUAAu -3' miRNA: 3'- -CCCCUCCACCCACUGAUGUGGUUAUU- -5' |
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3592 | 3' | -53 | NC_001650.1 | + | 181767 | 0.66 | 0.972605 |
Target: 5'- cGGGGAGGcGGccGGCUGCACa----- -3' miRNA: 3'- -CCCCUCCaCCcaCUGAUGUGguuauu -5' |
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3592 | 3' | -53 | NC_001650.1 | + | 175485 | 0.67 | 0.95976 |
Target: 5'- gGGGGAGcGUGGGgGugUGagggACCGAUu- -3' miRNA: 3'- -CCCCUC-CACCCaCugAUg---UGGUUAuu -5' |
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3592 | 3' | -53 | NC_001650.1 | + | 175228 | 0.74 | 0.707458 |
Target: 5'- gGGGGuGuGUGGGUGguggGCUACuguCCAAUAAa -3' miRNA: 3'- -CCCCuC-CACCCAC----UGAUGu--GGUUAUU- -5' |
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3592 | 3' | -53 | NC_001650.1 | + | 174316 | 0.77 | 0.532452 |
Target: 5'- gGGGuGAGGUGGGUGGCc-CGCCAu--- -3' miRNA: 3'- -CCC-CUCCACCCACUGauGUGGUuauu -5' |
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3592 | 3' | -53 | NC_001650.1 | + | 173595 | 0.66 | 0.982189 |
Target: 5'- gGGGGccgAGG-GGGU-ACUACcaugGCCAAUGAa -3' miRNA: 3'- -CCCC---UCCaCCCAcUGAUG----UGGUUAUU- -5' |
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3592 | 3' | -53 | NC_001650.1 | + | 166556 | 0.68 | 0.943271 |
Target: 5'- gGGGGGGGUGGGaGAggaauggaaUUGCA-CAAUGAg -3' miRNA: 3'- -CCCCUCCACCCaCU---------GAUGUgGUUAUU- -5' |
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3592 | 3' | -53 | NC_001650.1 | + | 165101 | 0.69 | 0.91125 |
Target: 5'- cGGGGGGUgGGGUGGCggcgGCGCg----- -3' miRNA: 3'- cCCCUCCA-CCCACUGa---UGUGguuauu -5' |
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3592 | 3' | -53 | NC_001650.1 | + | 155621 | 0.66 | 0.982189 |
Target: 5'- gGGGGAggagaGGUGGGgaggGGCcuCACCGAc-- -3' miRNA: 3'- -CCCCU-----CCACCCa---CUGauGUGGUUauu -5' |
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3592 | 3' | -53 | NC_001650.1 | + | 144035 | 0.75 | 0.64564 |
Target: 5'- aGGGGAGG-GGG-GGCaACGCCAAg-- -3' miRNA: 3'- -CCCCUCCaCCCaCUGaUGUGGUUauu -5' |
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3592 | 3' | -53 | NC_001650.1 | + | 140331 | 0.68 | 0.938549 |
Target: 5'- aGGGuuGGUGGGaUGGCUgGCAucCCAAUAAc -3' miRNA: 3'- -CCCcuCCACCC-ACUGA-UGU--GGUUAUU- -5' |
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3592 | 3' | -53 | NC_001650.1 | + | 136587 | 0.7 | 0.870516 |
Target: 5'- gGGGGAGGUgcccagaguGGGUGGCccACAUCAc--- -3' miRNA: 3'- -CCCCUCCA---------CCCACUGa-UGUGGUuauu -5' |
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3592 | 3' | -53 | NC_001650.1 | + | 126783 | 0.67 | 0.9633 |
Target: 5'- gGGGGAGGgaugGGGcGACgACACUc---- -3' miRNA: 3'- -CCCCUCCa---CCCaCUGaUGUGGuuauu -5' |
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3592 | 3' | -53 | NC_001650.1 | + | 124897 | 0.66 | 0.982189 |
Target: 5'- aGGGaGAGGgGGGaGACgcggGCACCGc--- -3' miRNA: 3'- -CCC-CUCCaCCCaCUGa---UGUGGUuauu -5' |
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3592 | 3' | -53 | NC_001650.1 | + | 117873 | 0.66 | 0.984131 |
Target: 5'- aGGuGGAGGUgaacucguGGGgcuGCUGCACCAc--- -3' miRNA: 3'- -CC-CCUCCA--------CCCac-UGAUGUGGUuauu -5' |
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3592 | 3' | -53 | NC_001650.1 | + | 117027 | 0.7 | 0.891939 |
Target: 5'- uGGGGAcgGcGUGGGUGGCUAUAaggguggCGAUGAg -3' miRNA: 3'- -CCCCU--C-CACCCACUGAUGUg------GUUAUU- -5' |
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3592 | 3' | -53 | NC_001650.1 | + | 111520 | 0.68 | 0.94775 |
Target: 5'- aGGGGAaagGGUGGGcaaGGCUGCGgCGGg-- -3' miRNA: 3'- -CCCCU---CCACCCa--CUGAUGUgGUUauu -5' |
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3592 | 3' | -53 | NC_001650.1 | + | 109121 | 0.67 | 0.966617 |
Target: 5'- gGGGGAGGUGGacgaGGCggcGCACCc---- -3' miRNA: 3'- -CCCCUCCACCca--CUGa--UGUGGuuauu -5' |
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3592 | 3' | -53 | NC_001650.1 | + | 106980 | 0.66 | 0.982189 |
Target: 5'- aGGGGAGGggggaauguggGGGUGugUACguguACUAc--- -3' miRNA: 3'- -CCCCUCCa----------CCCACugAUG----UGGUuauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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