Results 61 - 80 of 203 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 182232 | 0.67 | 0.866041 |
Target: 5'- -cUCUGCcCCccguGCAGCCGCCCcucUCCACc -3' miRNA: 3'- ccAGACGuGG----UGUUGGUGGGu--GGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 112651 | 0.67 | 0.863818 |
Target: 5'- --aUUGCcCCACcuGACCACCCaugaccccccaacaACCCACu -3' miRNA: 3'- ccaGACGuGGUG--UUGGUGGG--------------UGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 168419 | 0.67 | 0.873317 |
Target: 5'- --cCUGCcUgGCAACCGCCUACCuCAUc -3' miRNA: 3'- ccaGACGuGgUGUUGGUGGGUGG-GUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 172067 | 0.67 | 0.873317 |
Target: 5'- uGUCUGUGCCGCGgcgGCCAUCUugUCu- -3' miRNA: 3'- cCAGACGUGGUGU---UGGUGGGugGGug -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 30475 | 0.67 | 0.880383 |
Target: 5'- gGGUCU-CGCC-CAu---CCCGCCCGCg -3' miRNA: 3'- -CCAGAcGUGGuGUugguGGGUGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 48974 | 0.67 | 0.880383 |
Target: 5'- ---aUGCACCAUcAUCACCCugCCc- -3' miRNA: 3'- ccagACGUGGUGuUGGUGGGugGGug -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 132378 | 0.67 | 0.873317 |
Target: 5'- cGGUCacggGCACCuucuCCGcCCCGCCgGCc -3' miRNA: 3'- -CCAGa---CGUGGuguuGGU-GGGUGGgUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 109045 | 0.67 | 0.887235 |
Target: 5'- uGGgCaGCugCACGGCCcgcuCCCACgCGCg -3' miRNA: 3'- -CCaGaCGugGUGUUGGu---GGGUGgGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 155250 | 0.67 | 0.887235 |
Target: 5'- -cUCUGCgACCccuCGGCCGCCUACCa-- -3' miRNA: 3'- ccAGACG-UGGu--GUUGGUGGGUGGgug -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 51686 | 0.67 | 0.887235 |
Target: 5'- -uUUUGCGCCGuuuGCCAauCCCAgCCACa -3' miRNA: 3'- ccAGACGUGGUgu-UGGU--GGGUgGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 132137 | 0.67 | 0.887235 |
Target: 5'- cGUgaGCAgggcCCACAGCaggaaGCCCGCCCu- -3' miRNA: 3'- cCAgaCGU----GGUGUUGg----UGGGUGGGug -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 5360 | 0.67 | 0.873317 |
Target: 5'- uGUCUGUGCCGCGgcgGCCAUCUugUCu- -3' miRNA: 3'- cCAGACGUGGUGU---UGGUGGGugGGug -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 131890 | 0.67 | 0.858561 |
Target: 5'- cGGUCcugaGCACCuCcACCGCCC-CCCuCa -3' miRNA: 3'- -CCAGa---CGUGGuGuUGGUGGGuGGGuG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 163735 | 0.67 | 0.858561 |
Target: 5'- gGGUCUGgUGCCG-GGCCGCCCcuACCCu- -3' miRNA: 3'- -CCAGAC-GUGGUgUUGGUGGG--UGGGug -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 57545 | 0.67 | 0.857802 |
Target: 5'- aGG-CgGCGCCACAggcggguggggguGCCACCgGCgCUACg -3' miRNA: 3'- -CCaGaCGUGGUGU-------------UGGUGGgUG-GGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 111125 | 0.67 | 0.850883 |
Target: 5'- cGG-CUGUGCCGgGGCCugCuCGCCCc- -3' miRNA: 3'- -CCaGACGUGGUgUUGGugG-GUGGGug -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 108806 | 0.67 | 0.850883 |
Target: 5'- aGGccCUGCAcgucCCugGACUgGCCCGCCCAg -3' miRNA: 3'- -CCa-GACGU----GGugUUGG-UGGGUGGGUg -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 122199 | 0.67 | 0.850883 |
Target: 5'- ----aGCAUCACGuGCCGCCUgACCCGCc -3' miRNA: 3'- ccagaCGUGGUGU-UGGUGGG-UGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 11794 | 0.67 | 0.873317 |
Target: 5'- ---gUGC-CCACAACCcCCCaugaucacagACCCACa -3' miRNA: 3'- ccagACGuGGUGUUGGuGGG----------UGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 178501 | 0.67 | 0.873317 |
Target: 5'- ---gUGC-CCACAACCcCCCaugaucacagACCCACa -3' miRNA: 3'- ccagACGuGGUGUUGGuGGG----------UGGGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home