Results 101 - 120 of 203 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 97103 | 0.68 | 0.82672 |
Target: 5'- uGGUCcugGCugUGCGA--GCCCACCCAg -3' miRNA: 3'- -CCAGa--CGugGUGUUggUGGGUGGGUg -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 60544 | 0.68 | 0.82672 |
Target: 5'- cGUCaaccgGCGCCuGCAGCUcCCCGCCCu- -3' miRNA: 3'- cCAGa----CGUGG-UGUUGGuGGGUGGGug -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 98102 | 0.68 | 0.843012 |
Target: 5'- -cUCUGUcccucccucGCCGCAACCACaCCcCCCGu -3' miRNA: 3'- ccAGACG---------UGGUGUUGGUG-GGuGGGUg -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 108843 | 0.68 | 0.843012 |
Target: 5'- ----cGgGCCguGCAGCUGCCCACCCAg -3' miRNA: 3'- ccagaCgUGG--UGUUGGUGGGUGGGUg -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 30934 | 0.68 | 0.843012 |
Target: 5'- gGGUCgugGCACCgcccgcGCGACguCCUccuCCCACa -3' miRNA: 3'- -CCAGa--CGUGG------UGUUGguGGGu--GGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 27794 | 0.68 | 0.843012 |
Target: 5'- --gCUGUGCCGCGGCUccuGCCCGgCCAg -3' miRNA: 3'- ccaGACGUGGUGUUGG---UGGGUgGGUg -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 131614 | 0.68 | 0.834955 |
Target: 5'- uGGgcgcagCUGCugCugG-CCACCCgGCCCGa -3' miRNA: 3'- -CCa-----GACGugGugUuGGUGGG-UGGGUg -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 74465 | 0.68 | 0.834955 |
Target: 5'- aGGg--GUACCACAGa-GCCCACCCu- -3' miRNA: 3'- -CCagaCGUGGUGUUggUGGGUGGGug -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 48170 | 0.68 | 0.82672 |
Target: 5'- uGGUCaucaGCCACAgcgcgaugGCCACgCACCCAg -3' miRNA: 3'- -CCAGacg-UGGUGU--------UGGUGgGUGGGUg -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 106803 | 0.69 | 0.763772 |
Target: 5'- ----cGCACCuuaagacgccgggACGGCCACCCGCuCCAUg -3' miRNA: 3'- ccagaCGUGG-------------UGUUGGUGGGUG-GGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 148608 | 0.69 | 0.764705 |
Target: 5'- -cUCUGCACCccccACCACCCuccCCCAg -3' miRNA: 3'- ccAGACGUGGugu-UGGUGGGu--GGGUg -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 77124 | 0.69 | 0.764705 |
Target: 5'- uGGUCUGgGuggUCGCGGCgGCCCcgucGCCCAUg -3' miRNA: 3'- -CCAGACgU---GGUGUUGgUGGG----UGGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 157583 | 0.69 | 0.771207 |
Target: 5'- aGGUacaGCACCGC-GCCGCCCcugggcaacagagaACCCAg -3' miRNA: 3'- -CCAga-CGUGGUGuUGGUGGG--------------UGGGUg -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 15989 | 0.69 | 0.773975 |
Target: 5'- --cCUG-GCUACAuGCCuACCCGCCCACa -3' miRNA: 3'- ccaGACgUGGUGU-UGG-UGGGUGGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 182696 | 0.69 | 0.773975 |
Target: 5'- --cCUG-GCUACAuGCCuACCCGCCCACa -3' miRNA: 3'- ccaGACgUGGUGU-UGG-UGGGUGGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 57301 | 0.69 | 0.780392 |
Target: 5'- -cUCUGCuCCACAuuagcggccguagcGCCGguggcaccCCCACCCGCc -3' miRNA: 3'- ccAGACGuGGUGU--------------UGGU--------GGGUGGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 136515 | 0.69 | 0.773975 |
Target: 5'- aGGUC-GcCGCCGCcACCGCCCcCaCCGCc -3' miRNA: 3'- -CCAGaC-GUGGUGuUGGUGGGuG-GGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 165016 | 0.69 | 0.783122 |
Target: 5'- gGGUCUGC-UCGCGGCCGCCgGCg--- -3' miRNA: 3'- -CCAGACGuGGUGUUGGUGGgUGggug -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 164384 | 0.69 | 0.773975 |
Target: 5'- uGGUCcGCGCUGCAGa-ACUCGCCCAg -3' miRNA: 3'- -CCAGaCGUGGUGUUggUGGGUGGGUg -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 163232 | 0.69 | 0.783122 |
Target: 5'- cGUCUGCGCCACu-CU-CCCACCa-- -3' miRNA: 3'- cCAGACGUGGUGuuGGuGGGUGGgug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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