miRNA display CGI


Results 121 - 140 of 203 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3592 5' -56.7 NC_001650.1 + 57301 0.69 0.780392
Target:  5'- -cUCUGCuCCACAuuagcggccguagcGCCGguggcaccCCCACCCGCc -3'
miRNA:   3'- ccAGACGuGGUGU--------------UGGU--------GGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 164384 0.69 0.773975
Target:  5'- uGGUCcGCGCUGCAGa-ACUCGCCCAg -3'
miRNA:   3'- -CCAGaCGUGGUGUUggUGGGUGGGUg -5'
3592 5' -56.7 NC_001650.1 + 136515 0.69 0.773975
Target:  5'- aGGUC-GcCGCCGCcACCGCCCcCaCCGCc -3'
miRNA:   3'- -CCAGaC-GUGGUGuUGGUGGGuG-GGUG- -5'
3592 5' -56.7 NC_001650.1 + 182696 0.69 0.773975
Target:  5'- --cCUG-GCUACAuGCCuACCCGCCCACa -3'
miRNA:   3'- ccaGACgUGGUGU-UGG-UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 15989 0.69 0.773975
Target:  5'- --cCUG-GCUACAuGCCuACCCGCCCACa -3'
miRNA:   3'- ccaGACgUGGUGU-UGG-UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 106803 0.69 0.763772
Target:  5'- ----cGCACCuuaagacgccgggACGGCCACCCGCuCCAUg -3'
miRNA:   3'- ccagaCGUGG-------------UGUUGGUGGGUG-GGUG- -5'
3592 5' -56.7 NC_001650.1 + 157583 0.69 0.771207
Target:  5'- aGGUacaGCACCGC-GCCGCCCcugggcaacagagaACCCAg -3'
miRNA:   3'- -CCAga-CGUGGUGuUGGUGGG--------------UGGGUg -5'
3592 5' -56.7 NC_001650.1 + 77124 0.69 0.764705
Target:  5'- uGGUCUGgGuggUCGCGGCgGCCCcgucGCCCAUg -3'
miRNA:   3'- -CCAGACgU---GGUGUUGgUGGG----UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 180959 0.7 0.697109
Target:  5'- --cCUGC-CCACAuggACC-CCUGCCCACa -3'
miRNA:   3'- ccaGACGuGGUGU---UGGuGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 46398 0.7 0.745831
Target:  5'- ---aUGCGCCGCGGCgGCCCcCuCCGCu -3'
miRNA:   3'- ccagACGUGGUGUUGgUGGGuG-GGUG- -5'
3592 5' -56.7 NC_001650.1 + 180991 0.7 0.697109
Target:  5'- --cCUGC-CCACAuggACC-CCUGCCCACa -3'
miRNA:   3'- ccaGACGuGGUGU---UGGuGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 86838 0.7 0.697109
Target:  5'- aGGaagaUGCACC-CGAUCAgCCCGCCCAg -3'
miRNA:   3'- -CCag--ACGUGGuGUUGGU-GGGUGGGUg -5'
3592 5' -56.7 NC_001650.1 + 94420 0.7 0.697109
Target:  5'- cGG-CUGC-CCAU-ACCACCCaacaucACCCACc -3'
miRNA:   3'- -CCaGACGuGGUGuUGGUGGG------UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 116086 0.7 0.706994
Target:  5'- ----aGCAgCGCGGCCGCCCucgugugcACCCACu -3'
miRNA:   3'- ccagaCGUgGUGUUGGUGGG--------UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 164893 0.7 0.716818
Target:  5'- ----cGCGCCGCcGCCAcCCCACCCc- -3'
miRNA:   3'- ccagaCGUGGUGuUGGU-GGGUGGGug -5'
3592 5' -56.7 NC_001650.1 + 3983 0.7 0.716818
Target:  5'- gGGUg-GCGCCGgGGCggaGCUCGCCCACg -3'
miRNA:   3'- -CCAgaCGUGGUgUUGg--UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 406 0.7 0.726571
Target:  5'- aGGUCagucgccccuUGCACaacacccCAGCCAcucccCCCGCCCACg -3'
miRNA:   3'- -CCAG----------ACGUGgu-----GUUGGU-----GGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 167113 0.7 0.726571
Target:  5'- aGGUCagucgccccuUGCACaacacccCAGCCAcucccCCCGCCCACg -3'
miRNA:   3'- -CCAG----------ACGUGgu-----GUUGGU-----GGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 51239 0.7 0.710931
Target:  5'- gGGUCacGC-CCACcuugaucugagagggGGCCGCCgCGCCCGCg -3'
miRNA:   3'- -CCAGa-CGuGGUG---------------UUGGUGG-GUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 145951 0.7 0.697109
Target:  5'- cGGacCUGCccGCCAUGgcccuGCCGCCCugCCACc -3'
miRNA:   3'- -CCa-GACG--UGGUGU-----UGGUGGGugGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.