miRNA display CGI


Results 61 - 80 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3592 5' -56.7 NC_001650.1 + 14284 0.7 0.697109
Target:  5'- --cCUGC-CCACAuggACC-CCUGCCCACa -3'
miRNA:   3'- ccaGACGuGGUGU---UGGuGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 180959 0.7 0.697109
Target:  5'- --cCUGC-CCACAuggACC-CCUGCCCACa -3'
miRNA:   3'- ccaGACGuGGUGU---UGGuGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 14252 0.7 0.697109
Target:  5'- --cCUGC-CCACAuggACC-CCUGCCCACa -3'
miRNA:   3'- ccaGACGuGGUGU---UGGuGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 77333 0.7 0.697109
Target:  5'- cGGg--GcCGCCGCGACCACCCAgaCCAa -3'
miRNA:   3'- -CCagaC-GUGGUGUUGGUGGGUg-GGUg -5'
3592 5' -56.7 NC_001650.1 + 94420 0.7 0.697109
Target:  5'- cGG-CUGC-CCAU-ACCACCCaacaucACCCACc -3'
miRNA:   3'- -CCaGACGuGGUGuUGGUGGG------UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 116086 0.7 0.706994
Target:  5'- ----aGCAgCGCGGCCGCCCucgugugcACCCACu -3'
miRNA:   3'- ccagaCGUgGUGUUGGUGGG--------UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 51239 0.7 0.710931
Target:  5'- gGGUCacGC-CCACcuugaucugagagggGGCCGCCgCGCCCGCg -3'
miRNA:   3'- -CCAGa-CGuGGUG---------------UUGGUGG-GUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 3983 0.7 0.716818
Target:  5'- gGGUg-GCGCCGgGGCggaGCUCGCCCACg -3'
miRNA:   3'- -CCAgaCGUGGUgUUGg--UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 91828 0.7 0.716818
Target:  5'- aGGUCaGCAUCACcuCCAgCCUGCUCACc -3'
miRNA:   3'- -CCAGaCGUGGUGuuGGU-GGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 164893 0.7 0.716818
Target:  5'- ----cGCGCCGCcGCCAcCCCACCCc- -3'
miRNA:   3'- ccagaCGUGGUGuUGGU-GGGUGGGug -5'
3592 5' -56.7 NC_001650.1 + 406 0.7 0.726571
Target:  5'- aGGUCagucgccccuUGCACaacacccCAGCCAcucccCCCGCCCACg -3'
miRNA:   3'- -CCAG----------ACGUGgu-----GUUGGU-----GGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 167113 0.7 0.726571
Target:  5'- aGGUCagucgccccuUGCACaacacccCAGCCAcucccCCCGCCCACg -3'
miRNA:   3'- -CCAG----------ACGUGgu-----GUUGGU-----GGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 46398 0.7 0.745831
Target:  5'- ---aUGCGCCGCGGCgGCCCcCuCCGCu -3'
miRNA:   3'- ccagACGUGGUGUUGgUGGGuG-GGUG- -5'
3592 5' -56.7 NC_001650.1 + 52138 0.7 0.745831
Target:  5'- -uUCUGCAacuCCACAauuGCCACCUACgUGCg -3'
miRNA:   3'- ccAGACGU---GGUGU---UGGUGGGUGgGUG- -5'
3592 5' -56.7 NC_001650.1 + 79930 0.7 0.745831
Target:  5'- aGUCUGC-CCAgAGCCcuACgUGCCCGCg -3'
miRNA:   3'- cCAGACGuGGUgUUGG--UGgGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 132905 0.69 0.752485
Target:  5'- cGGUg-GCGCCcgcuccgcgagacuACAGCCGCCCGagggucccCCCGCg -3'
miRNA:   3'- -CCAgaCGUGG--------------UGUUGGUGGGU--------GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 51109 0.69 0.755321
Target:  5'- uGGUgCUGgGCCGaGGCCAccgucCCCAUCCACu -3'
miRNA:   3'- -CCA-GACgUGGUgUUGGU-----GGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 132696 0.69 0.755321
Target:  5'- gGGUCcaGCACCACGaugaACCugucccucuuucGCCCGCCCc- -3'
miRNA:   3'- -CCAGa-CGUGGUGU----UGG------------UGGGUGGGug -5'
3592 5' -56.7 NC_001650.1 + 93549 0.69 0.755321
Target:  5'- uGGUCUGCGuggggucgcCCACGcagacggacGCCAuacagUCCACCUACa -3'
miRNA:   3'- -CCAGACGU---------GGUGU---------UGGU-----GGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 106803 0.69 0.763772
Target:  5'- ----cGCACCuuaagacgccgggACGGCCACCCGCuCCAUg -3'
miRNA:   3'- ccagaCGUGG-------------UGUUGGUGGGUG-GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.