miRNA display CGI


Results 81 - 100 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3592 5' -56.7 NC_001650.1 + 77124 0.69 0.764705
Target:  5'- uGGUCUGgGuggUCGCGGCgGCCCcgucGCCCAUg -3'
miRNA:   3'- -CCAGACgU---GGUGUUGgUGGG----UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 148608 0.69 0.764705
Target:  5'- -cUCUGCACCccccACCACCCuccCCCAg -3'
miRNA:   3'- ccAGACGUGGugu-UGGUGGGu--GGGUg -5'
3592 5' -56.7 NC_001650.1 + 35520 0.69 0.764705
Target:  5'- aGGUCaGgGCCACAGgCgugugGCCCugGCCCGCg -3'
miRNA:   3'- -CCAGaCgUGGUGUUgG-----UGGG--UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 157583 0.69 0.771207
Target:  5'- aGGUacaGCACCGC-GCCGCCCcugggcaacagagaACCCAg -3'
miRNA:   3'- -CCAga-CGUGGUGuUGGUGGG--------------UGGGUg -5'
3592 5' -56.7 NC_001650.1 + 78903 0.69 0.773975
Target:  5'- gGGUCUGCACaaaaAACUcUgCGCCCGCg -3'
miRNA:   3'- -CCAGACGUGgug-UUGGuGgGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 130175 0.69 0.773975
Target:  5'- gGGcCcGCGCCACGGgCGCCUccaggggcguGCCCGCc -3'
miRNA:   3'- -CCaGaCGUGGUGUUgGUGGG----------UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 164384 0.69 0.773975
Target:  5'- uGGUCcGCGCUGCAGa-ACUCGCCCAg -3'
miRNA:   3'- -CCAGaCGUGGUGUUggUGGGUGGGUg -5'
3592 5' -56.7 NC_001650.1 + 136515 0.69 0.773975
Target:  5'- aGGUC-GcCGCCGCcACCGCCCcCaCCGCc -3'
miRNA:   3'- -CCAGaC-GUGGUGuUGGUGGGuG-GGUG- -5'
3592 5' -56.7 NC_001650.1 + 182696 0.69 0.773975
Target:  5'- --cCUG-GCUACAuGCCuACCCGCCCACa -3'
miRNA:   3'- ccaGACgUGGUGU-UGG-UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 15989 0.69 0.773975
Target:  5'- --cCUG-GCUACAuGCCuACCCGCCCACa -3'
miRNA:   3'- ccaGACgUGGUGU-UGG-UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 57301 0.69 0.780392
Target:  5'- -cUCUGCuCCACAuuagcggccguagcGCCGguggcaccCCCACCCGCc -3'
miRNA:   3'- ccAGACGuGGUGU--------------UGGU--------GGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 165016 0.69 0.783122
Target:  5'- gGGUCUGC-UCGCGGCCGCCgGCg--- -3'
miRNA:   3'- -CCAGACGuGGUGUUGGUGGgUGggug -5'
3592 5' -56.7 NC_001650.1 + 163232 0.69 0.783122
Target:  5'- cGUCUGCGCCACu-CU-CCCACCa-- -3'
miRNA:   3'- cCAGACGUGGUGuuGGuGGGUGGgug -5'
3592 5' -56.7 NC_001650.1 + 22931 0.69 0.783122
Target:  5'- uGGaCaGCACCGC--CCuCCCGCCCGCc -3'
miRNA:   3'- -CCaGaCGUGGUGuuGGuGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 82554 0.68 0.801014
Target:  5'- --gCUGCccaACUACAugUACCgGCCCGCc -3'
miRNA:   3'- ccaGACG---UGGUGUugGUGGgUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 92469 0.68 0.801014
Target:  5'- ----aGCcCCACAGCCACCacccaAUCCACa -3'
miRNA:   3'- ccagaCGuGGUGUUGGUGGg----UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 35792 0.68 0.801014
Target:  5'- uGGUacucgUGCGCgGCGGCCGuCCCGCgCCAg -3'
miRNA:   3'- -CCAg----ACGUGgUGUUGGU-GGGUG-GGUg -5'
3592 5' -56.7 NC_001650.1 + 29268 0.68 0.801014
Target:  5'- aGGUaCUcCcCCACGucgGCCACCC-CCCGCg -3'
miRNA:   3'- -CCA-GAcGuGGUGU---UGGUGGGuGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 130472 0.68 0.809742
Target:  5'- uGGUCUGgCugCACAggACCuucaagGCCCugCUGCc -3'
miRNA:   3'- -CCAGAC-GugGUGU--UGG------UGGGugGGUG- -5'
3592 5' -56.7 NC_001650.1 + 45010 0.68 0.809742
Target:  5'- aGGUCUGCugggugcccACCACGGa-ACCCAUCCu- -3'
miRNA:   3'- -CCAGACG---------UGGUGUUggUGGGUGGGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.