Results 101 - 120 of 203 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 142990 | 0.68 | 0.809742 |
Target: 5'- cGUCUGgGCC-CGGCCGCC-GCCCu- -3' miRNA: 3'- cCAGACgUGGuGUUGGUGGgUGGGug -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 23522 | 0.68 | 0.809742 |
Target: 5'- --aCUGCugCGCGACCcuGCCCGaggcgcaccugUCCACg -3' miRNA: 3'- ccaGACGugGUGUUGG--UGGGU-----------GGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 133300 | 0.68 | 0.818313 |
Target: 5'- uGGgccCUGCACCugGcucGCCGCCgGCCgCGg -3' miRNA: 3'- -CCa--GACGUGGugU---UGGUGGgUGG-GUg -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 49204 | 0.68 | 0.818313 |
Target: 5'- aGGgcgagCUGCGCCugGuGCuCACCCcCCUGCg -3' miRNA: 3'- -CCa----GACGUGGugU-UG-GUGGGuGGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 142166 | 0.68 | 0.825887 |
Target: 5'- gGGUCgaggGCAgaCGCGGCCGaggggguuugcccCCCugCCGCg -3' miRNA: 3'- -CCAGa---CGUg-GUGUUGGU-------------GGGugGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 48170 | 0.68 | 0.82672 |
Target: 5'- uGGUCaucaGCCACAgcgcgaugGCCACgCACCCAg -3' miRNA: 3'- -CCAGacg-UGGUGU--------UGGUGgGUGGGUg -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 59584 | 0.68 | 0.82672 |
Target: 5'- cGGUUggcguuaaagUGCAuCCACAGCUgcGCCCugCgGCg -3' miRNA: 3'- -CCAG----------ACGU-GGUGUUGG--UGGGugGgUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 60544 | 0.68 | 0.82672 |
Target: 5'- cGUCaaccgGCGCCuGCAGCUcCCCGCCCu- -3' miRNA: 3'- cCAGa----CGUGG-UGUUGGuGGGUGGGug -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 97103 | 0.68 | 0.82672 |
Target: 5'- uGGUCcugGCugUGCGA--GCCCACCCAg -3' miRNA: 3'- -CCAGa--CGugGUGUUggUGGGUGGGUg -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 119525 | 0.68 | 0.82672 |
Target: 5'- cGGUCUGCAUgCugGGCUACUCcUCCAg -3' miRNA: 3'- -CCAGACGUG-GugUUGGUGGGuGGGUg -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 136356 | 0.68 | 0.82672 |
Target: 5'- aGGUCcGCGCaGCGggugauguggGCCACCCACUCu- -3' miRNA: 3'- -CCAGaCGUGgUGU----------UGGUGGGUGGGug -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 54727 | 0.68 | 0.834955 |
Target: 5'- -uUUUGgACCcguggcucGCGACCACCCACCUg- -3' miRNA: 3'- ccAGACgUGG--------UGUUGGUGGGUGGGug -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 74465 | 0.68 | 0.834955 |
Target: 5'- aGGg--GUACCACAGa-GCCCACCCu- -3' miRNA: 3'- -CCagaCGUGGUGUUggUGGGUGGGug -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 131614 | 0.68 | 0.834955 |
Target: 5'- uGGgcgcagCUGCugCugG-CCACCCgGCCCGa -3' miRNA: 3'- -CCa-----GACGugGugUuGGUGGG-UGGGUg -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 27794 | 0.68 | 0.843012 |
Target: 5'- --gCUGUGCCGCGGCUccuGCCCGgCCAg -3' miRNA: 3'- ccaGACGUGGUGUUGG---UGGGUgGGUg -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 30934 | 0.68 | 0.843012 |
Target: 5'- gGGUCgugGCACCgcccgcGCGACguCCUccuCCCACa -3' miRNA: 3'- -CCAGa--CGUGG------UGUUGguGGGu--GGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 108843 | 0.68 | 0.843012 |
Target: 5'- ----cGgGCCguGCAGCUGCCCACCCAg -3' miRNA: 3'- ccagaCgUGG--UGUUGGUGGGUGGGUg -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 98102 | 0.68 | 0.843012 |
Target: 5'- -cUCUGUcccucccucGCCGCAACCACaCCcCCCGu -3' miRNA: 3'- ccAGACG---------UGGUGUUGGUG-GGuGGGUg -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 4243 | 0.67 | 0.850883 |
Target: 5'- uGGUCaUGCgaugACCGCGagguACCcUCCACCCAg -3' miRNA: 3'- -CCAG-ACG----UGGUGU----UGGuGGGUGGGUg -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 170950 | 0.67 | 0.850883 |
Target: 5'- uGGUCaUGCgaugACCGCGagguACCcUCCACCCAg -3' miRNA: 3'- -CCAG-ACG----UGGUGU----UGGuGGGUGGGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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