miRNA display CGI


Results 81 - 100 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3592 5' -56.7 NC_001650.1 + 122199 0.67 0.850883
Target:  5'- ----aGCAUCACGuGCCGCCUgACCCGCc -3'
miRNA:   3'- ccagaCGUGGUGU-UGGUGGG-UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 111125 0.67 0.850883
Target:  5'- cGG-CUGUGCCGgGGCCugCuCGCCCc- -3'
miRNA:   3'- -CCaGACGUGGUgUUGGugG-GUGGGug -5'
3592 5' -56.7 NC_001650.1 + 108806 0.67 0.850883
Target:  5'- aGGccCUGCAcgucCCugGACUgGCCCGCCCAg -3'
miRNA:   3'- -CCa-GACGU----GGugUUGG-UGGGUGGGUg -5'
3592 5' -56.7 NC_001650.1 + 4243 0.67 0.850883
Target:  5'- uGGUCaUGCgaugACCGCGagguACCcUCCACCCAg -3'
miRNA:   3'- -CCAG-ACG----UGGUGU----UGGuGGGUGGGUg -5'
3592 5' -56.7 NC_001650.1 + 170950 0.67 0.850883
Target:  5'- uGGUCaUGCgaugACCGCGagguACCcUCCACCCAg -3'
miRNA:   3'- -CCAG-ACG----UGGUGU----UGGuGGGUGGGUg -5'
3592 5' -56.7 NC_001650.1 + 98102 0.68 0.843012
Target:  5'- -cUCUGUcccucccucGCCGCAACCACaCCcCCCGu -3'
miRNA:   3'- ccAGACG---------UGGUGUUGGUG-GGuGGGUg -5'
3592 5' -56.7 NC_001650.1 + 27794 0.68 0.843012
Target:  5'- --gCUGUGCCGCGGCUccuGCCCGgCCAg -3'
miRNA:   3'- ccaGACGUGGUGUUGG---UGGGUgGGUg -5'
3592 5' -56.7 NC_001650.1 + 30934 0.68 0.843012
Target:  5'- gGGUCgugGCACCgcccgcGCGACguCCUccuCCCACa -3'
miRNA:   3'- -CCAGa--CGUGG------UGUUGguGGGu--GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 108843 0.68 0.843012
Target:  5'- ----cGgGCCguGCAGCUGCCCACCCAg -3'
miRNA:   3'- ccagaCgUGG--UGUUGGUGGGUGGGUg -5'
3592 5' -56.7 NC_001650.1 + 74465 0.68 0.834955
Target:  5'- aGGg--GUACCACAGa-GCCCACCCu- -3'
miRNA:   3'- -CCagaCGUGGUGUUggUGGGUGGGug -5'
3592 5' -56.7 NC_001650.1 + 54727 0.68 0.834955
Target:  5'- -uUUUGgACCcguggcucGCGACCACCCACCUg- -3'
miRNA:   3'- ccAGACgUGG--------UGUUGGUGGGUGGGug -5'
3592 5' -56.7 NC_001650.1 + 131614 0.68 0.834955
Target:  5'- uGGgcgcagCUGCugCugG-CCACCCgGCCCGa -3'
miRNA:   3'- -CCa-----GACGugGugUuGGUGGG-UGGGUg -5'
3592 5' -56.7 NC_001650.1 + 119525 0.68 0.82672
Target:  5'- cGGUCUGCAUgCugGGCUACUCcUCCAg -3'
miRNA:   3'- -CCAGACGUG-GugUUGGUGGGuGGGUg -5'
3592 5' -56.7 NC_001650.1 + 48170 0.68 0.82672
Target:  5'- uGGUCaucaGCCACAgcgcgaugGCCACgCACCCAg -3'
miRNA:   3'- -CCAGacg-UGGUGU--------UGGUGgGUGGGUg -5'
3592 5' -56.7 NC_001650.1 + 60544 0.68 0.82672
Target:  5'- cGUCaaccgGCGCCuGCAGCUcCCCGCCCu- -3'
miRNA:   3'- cCAGa----CGUGG-UGUUGGuGGGUGGGug -5'
3592 5' -56.7 NC_001650.1 + 97103 0.68 0.82672
Target:  5'- uGGUCcugGCugUGCGA--GCCCACCCAg -3'
miRNA:   3'- -CCAGa--CGugGUGUUggUGGGUGGGUg -5'
3592 5' -56.7 NC_001650.1 + 136356 0.68 0.82672
Target:  5'- aGGUCcGCGCaGCGggugauguggGCCACCCACUCu- -3'
miRNA:   3'- -CCAGaCGUGgUGU----------UGGUGGGUGGGug -5'
3592 5' -56.7 NC_001650.1 + 59584 0.68 0.82672
Target:  5'- cGGUUggcguuaaagUGCAuCCACAGCUgcGCCCugCgGCg -3'
miRNA:   3'- -CCAG----------ACGU-GGUGUUGG--UGGGugGgUG- -5'
3592 5' -56.7 NC_001650.1 + 142166 0.68 0.825887
Target:  5'- gGGUCgaggGCAgaCGCGGCCGaggggguuugcccCCCugCCGCg -3'
miRNA:   3'- -CCAGa---CGUg-GUGUUGGU-------------GGGugGGUG- -5'
3592 5' -56.7 NC_001650.1 + 133300 0.68 0.818313
Target:  5'- uGGgccCUGCACCugGcucGCCGCCgGCCgCGg -3'
miRNA:   3'- -CCa--GACGUGGugU---UGGUGGgUGG-GUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.