miRNA display CGI


Results 81 - 100 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3592 5' -56.7 NC_001650.1 + 76959 0.73 0.55685
Target:  5'- aGGacUCUGCggugGCCAUcGCCACCCugCUGCa -3'
miRNA:   3'- -CC--AGACG----UGGUGuUGGUGGGugGGUG- -5'
3592 5' -56.7 NC_001650.1 + 77046 0.71 0.667172
Target:  5'- --gCUGCGCgGCGGCC-CUCAUCCGCu -3'
miRNA:   3'- ccaGACGUGgUGUUGGuGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 77124 0.69 0.764705
Target:  5'- uGGUCUGgGuggUCGCGGCgGCCCcgucGCCCAUg -3'
miRNA:   3'- -CCAGACgU---GGUGUUGgUGGG----UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 77333 0.7 0.697109
Target:  5'- cGGg--GcCGCCGCGACCACCCAgaCCAa -3'
miRNA:   3'- -CCagaC-GUGGUGUUGGUGGGUg-GGUg -5'
3592 5' -56.7 NC_001650.1 + 77451 0.66 0.906466
Target:  5'- uGGUCUcGUGCCccuGCuACCGccuacacaucCCCACCUACa -3'
miRNA:   3'- -CCAGA-CGUGG---UGuUGGU----------GGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 78840 0.67 0.873317
Target:  5'- cGGgCaGCACCACGugggcuagucuGCCGCagcggCGCCCGCa -3'
miRNA:   3'- -CCaGaCGUGGUGU-----------UGGUGg----GUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 78903 0.69 0.773975
Target:  5'- gGGUCUGCACaaaaAACUcUgCGCCCGCg -3'
miRNA:   3'- -CCAGACGUGgug-UUGGuGgGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 79930 0.7 0.745831
Target:  5'- aGUCUGC-CCAgAGCCcuACgUGCCCGCg -3'
miRNA:   3'- cCAGACGuGGUgUUGG--UGgGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 80375 0.72 0.586697
Target:  5'- cGUgUGCGCUGCccGGCCGCCCucgcccuCCCACa -3'
miRNA:   3'- cCAgACGUGGUG--UUGGUGGGu------GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 82554 0.68 0.801014
Target:  5'- --gCUGCccaACUACAugUACCgGCCCGCc -3'
miRNA:   3'- ccaGACG---UGGUGUugGUGGgUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 86838 0.7 0.697109
Target:  5'- aGGaagaUGCACC-CGAUCAgCCCGCCCAg -3'
miRNA:   3'- -CCag--ACGUGGuGUUGGU-GGGUGGGUg -5'
3592 5' -56.7 NC_001650.1 + 88020 0.66 0.893868
Target:  5'- gGGUgCUgGCucuCUGCcAUCACUCACCCACa -3'
miRNA:   3'- -CCA-GA-CGu--GGUGuUGGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 89116 0.66 0.906466
Target:  5'- cGGgggGCAUCcuGCuacACCACCCGCCCu- -3'
miRNA:   3'- -CCagaCGUGG--UGu--UGGUGGGUGGGug -5'
3592 5' -56.7 NC_001650.1 + 89294 0.66 0.912424
Target:  5'- cGGUCgucccccGCGacgagccaguCCGCggUCACCCGCCuCAUg -3'
miRNA:   3'- -CCAGa------CGU----------GGUGuuGGUGGGUGG-GUG- -5'
3592 5' -56.7 NC_001650.1 + 89722 0.71 0.636985
Target:  5'- aGUCUGUgggcgaGCCugGgagACCACCC-CCCGCc -3'
miRNA:   3'- cCAGACG------UGGugU---UGGUGGGuGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 91828 0.7 0.716818
Target:  5'- aGGUCaGCAUCACcuCCAgCCUGCUCACc -3'
miRNA:   3'- -CCAGaCGUGGUGuuGGU-GGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 92469 0.68 0.801014
Target:  5'- ----aGCcCCACAGCCACCacccaAUCCACa -3'
miRNA:   3'- ccagaCGuGGUGUUGGUGGg----UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 93144 0.71 0.687171
Target:  5'- cGGUCUuuGCCGcCAGCCcccggauCCUGCCCACu -3'
miRNA:   3'- -CCAGAcgUGGU-GUUGGu------GGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 93228 0.72 0.606765
Target:  5'- ----cGCGCCACGGCCgaaACgCGCCCGCg -3'
miRNA:   3'- ccagaCGUGGUGUUGG---UGgGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 93549 0.69 0.755321
Target:  5'- uGGUCUGCGuggggucgcCCACGcagacggacGCCAuacagUCCACCUACa -3'
miRNA:   3'- -CCAGACGU---------GGUGU---------UGGU-----GGGUGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.