Results 101 - 120 of 203 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 94420 | 0.7 | 0.697109 |
Target: 5'- cGG-CUGC-CCAU-ACCACCCaacaucACCCACc -3' miRNA: 3'- -CCaGACGuGGUGuUGGUGGG------UGGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 96323 | 0.76 | 0.399979 |
Target: 5'- aGGaCUGCACCcaguGCAACCcCCCuuCCCACg -3' miRNA: 3'- -CCaGACGUGG----UGUUGGuGGGu-GGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 97103 | 0.68 | 0.82672 |
Target: 5'- uGGUCcugGCugUGCGA--GCCCACCCAg -3' miRNA: 3'- -CCAGa--CGugGUGUUggUGGGUGGGUg -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 98102 | 0.68 | 0.843012 |
Target: 5'- -cUCUGUcccucccucGCCGCAACCACaCCcCCCGu -3' miRNA: 3'- ccAGACG---------UGGUGUUGGUG-GGuGGGUg -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 100571 | 0.66 | 0.906466 |
Target: 5'- cGUC-GCACCcgcCGGCCGCgucccUCACCCGCc -3' miRNA: 3'- cCAGaCGUGGu--GUUGGUG-----GGUGGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 102091 | 0.76 | 0.399979 |
Target: 5'- cGUCUGgAUgGCGaaGCCGCCCGCCUGCa -3' miRNA: 3'- cCAGACgUGgUGU--UGGUGGGUGGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 104944 | 0.71 | 0.67719 |
Target: 5'- gGGUCaGCACCACAucgUCGUCC-CCCACa -3' miRNA: 3'- -CCAGaCGUGGUGUu--GGUGGGuGGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 106039 | 0.66 | 0.918153 |
Target: 5'- aGG-CgaGCACCACggUCACCauagACUCGCg -3' miRNA: 3'- -CCaGa-CGUGGUGuuGGUGGg---UGGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 106803 | 0.69 | 0.763772 |
Target: 5'- ----cGCACCuuaagacgccgggACGGCCACCCGCuCCAUg -3' miRNA: 3'- ccagaCGUGG-------------UGUUGGUGGGUG-GGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 108806 | 0.67 | 0.850883 |
Target: 5'- aGGccCUGCAcgucCCugGACUgGCCCGCCCAg -3' miRNA: 3'- -CCa-GACGU----GGugUUGG-UGGGUGGGUg -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 108843 | 0.68 | 0.843012 |
Target: 5'- ----cGgGCCguGCAGCUGCCCACCCAg -3' miRNA: 3'- ccagaCgUGG--UGUUGGUGGGUGGGUg -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 109045 | 0.67 | 0.887235 |
Target: 5'- uGGgCaGCugCACGGCCcgcuCCCACgCGCg -3' miRNA: 3'- -CCaGaCGugGUGUUGGu---GGGUGgGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 109669 | 0.73 | 0.55685 |
Target: 5'- uGGUCUGCcagACCcagcaGCAGCUGCCCAgguCCUACg -3' miRNA: 3'- -CCAGACG---UGG-----UGUUGGUGGGU---GGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 110916 | 0.71 | 0.647062 |
Target: 5'- --gCUGCugCgGCAGCCugGCCUGCCCGCu -3' miRNA: 3'- ccaGACGugG-UGUUGG--UGGGUGGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 111125 | 0.67 | 0.850883 |
Target: 5'- cGG-CUGUGCCGgGGCCugCuCGCCCc- -3' miRNA: 3'- -CCaGACGUGGUgUUGGugG-GUGGGug -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 111272 | 0.67 | 0.866041 |
Target: 5'- gGGcCUcGC-CCGCAGCaguGCCCGCCC-Ca -3' miRNA: 3'- -CCaGA-CGuGGUGUUGg--UGGGUGGGuG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 111304 | 0.71 | 0.687171 |
Target: 5'- ---gUGCccGCCGCAGCCuuGCCCACCCu- -3' miRNA: 3'- ccagACG--UGGUGUUGG--UGGGUGGGug -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 112651 | 0.67 | 0.863818 |
Target: 5'- --aUUGCcCCACcuGACCACCCaugaccccccaacaACCCACu -3' miRNA: 3'- ccaGACGuGGUG--UUGGUGGG--------------UGGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 115344 | 0.67 | 0.866041 |
Target: 5'- --aCUGCACCucccuCAccuCCuggucCCCGCCCGCg -3' miRNA: 3'- ccaGACGUGGu----GUu--GGu----GGGUGGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 116086 | 0.7 | 0.706994 |
Target: 5'- ----aGCAgCGCGGCCGCCCucgugugcACCCACu -3' miRNA: 3'- ccagaCGUgGUGUUGGUGGG--------UGGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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