Results 121 - 140 of 203 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 116252 | 0.66 | 0.90028 |
Target: 5'- uGGUCUugGCCuCGGaCACCCGCCCGu -3' miRNA: 3'- -CCAGAcgUGGuGUUgGUGGGUGGGUg -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 117018 | 0.66 | 0.914743 |
Target: 5'- uGGcUCUGguCCACAaacggggaccuggccGCCGCCCugCgGa -3' miRNA: 3'- -CC-AGACguGGUGU---------------UGGUGGGugGgUg -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 118264 | 0.66 | 0.912424 |
Target: 5'- ---gUGCGCCACGGgcuguacucguCCAgCCUGCCCGCc -3' miRNA: 3'- ccagACGUGGUGUU-----------GGU-GGGUGGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 118733 | 0.72 | 0.596718 |
Target: 5'- -aUCUGCAgCGCGcucucguacACCGCCC-CCCGCc -3' miRNA: 3'- ccAGACGUgGUGU---------UGGUGGGuGGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 119473 | 0.66 | 0.90028 |
Target: 5'- --cUUGCACUuucGCAGCUACUCucuGCCCACc -3' miRNA: 3'- ccaGACGUGG---UGUUGGUGGG---UGGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 119525 | 0.68 | 0.82672 |
Target: 5'- cGGUCUGCAUgCugGGCUACUCcUCCAg -3' miRNA: 3'- -CCAGACGUG-GugUUGGUGGGuGGGUg -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 119824 | 0.66 | 0.918153 |
Target: 5'- gGGUgUGgGgCGCGGCguccgCGCCCAgCCCGCa -3' miRNA: 3'- -CCAgACgUgGUGUUG-----GUGGGU-GGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 120046 | 0.74 | 0.474281 |
Target: 5'- gGGUCUGCgggcugggcgcggacGCCGC-GCC-CCaCACCCACa -3' miRNA: 3'- -CCAGACG---------------UGGUGuUGGuGG-GUGGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 121275 | 0.66 | 0.906466 |
Target: 5'- cGGcCUGCuCCaACAagaGCCACCUgucCCCGCc -3' miRNA: 3'- -CCaGACGuGG-UGU---UGGUGGGu--GGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 121492 | 0.66 | 0.899015 |
Target: 5'- --cCUGCGCCgcuGCAGCCccaccagcaucuCCCACCgGCu -3' miRNA: 3'- ccaGACGUGG---UGUUGGu-----------GGGUGGgUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 122199 | 0.67 | 0.850883 |
Target: 5'- ----aGCAUCACGuGCCGCCUgACCCGCc -3' miRNA: 3'- ccagaCGUGGUGU-UGGUGGG-UGGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 122408 | 0.67 | 0.858561 |
Target: 5'- ----cGCGCUACAACUACCUGUCCGCc -3' miRNA: 3'- ccagaCGUGGUGUUGGUGGGUGGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 124505 | 0.67 | 0.880383 |
Target: 5'- cGUC--CGCCGCGGCCucguCCCugCCAUu -3' miRNA: 3'- cCAGacGUGGUGUUGGu---GGGugGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 127965 | 0.66 | 0.893868 |
Target: 5'- aGGUgcCUGCccGCCAUcuaCACCCagACCCGCg -3' miRNA: 3'- -CCA--GACG--UGGUGuugGUGGG--UGGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 130175 | 0.69 | 0.773975 |
Target: 5'- gGGcCcGCGCCACGGgCGCCUccaggggcguGCCCGCc -3' miRNA: 3'- -CCaGaCGUGGUGUUgGUGGG----------UGGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 130472 | 0.68 | 0.809742 |
Target: 5'- uGGUCUGgCugCACAggACCuucaagGCCCugCUGCc -3' miRNA: 3'- -CCAGAC-GugGUGU--UGG------UGGGugGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 131559 | 0.67 | 0.880383 |
Target: 5'- aGUCccguacaggGCcCC-CGGCCggGCCCACCCGCg -3' miRNA: 3'- cCAGa--------CGuGGuGUUGG--UGGGUGGGUG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 131614 | 0.68 | 0.834955 |
Target: 5'- uGGgcgcagCUGCugCugG-CCACCCgGCCCGa -3' miRNA: 3'- -CCa-----GACGugGugUuGGUGGG-UGGGUg -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 131890 | 0.67 | 0.858561 |
Target: 5'- cGGUCcugaGCACCuCcACCGCCC-CCCuCa -3' miRNA: 3'- -CCAGa---CGUGGuGuUGGUGGGuGGGuG- -5' |
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3592 | 5' | -56.7 | NC_001650.1 | + | 132137 | 0.67 | 0.887235 |
Target: 5'- cGUgaGCAgggcCCACAGCaggaaGCCCGCCCu- -3' miRNA: 3'- cCAgaCGU----GGUGUUGg----UGGGUGGGug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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