miRNA display CGI


Results 61 - 80 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3592 5' -56.7 NC_001650.1 + 132696 0.69 0.755321
Target:  5'- gGGUCcaGCACCACGaugaACCugucccucuuucGCCCGCCCc- -3'
miRNA:   3'- -CCAGa-CGUGGUGU----UGG------------UGGGUGGGug -5'
3592 5' -56.7 NC_001650.1 + 132378 0.67 0.873317
Target:  5'- cGGUCacggGCACCuucuCCGcCCCGCCgGCc -3'
miRNA:   3'- -CCAGa---CGUGGuguuGGU-GGGUGGgUG- -5'
3592 5' -56.7 NC_001650.1 + 132212 0.76 0.408433
Target:  5'- gGGUgcCUGCugCGCGGCguCuCCGCCCACa -3'
miRNA:   3'- -CCA--GACGugGUGUUGguG-GGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 132137 0.67 0.887235
Target:  5'- cGUgaGCAgggcCCACAGCaggaaGCCCGCCCu- -3'
miRNA:   3'- cCAgaCGU----GGUGUUGg----UGGGUGGGug -5'
3592 5' -56.7 NC_001650.1 + 131890 0.67 0.858561
Target:  5'- cGGUCcugaGCACCuCcACCGCCC-CCCuCa -3'
miRNA:   3'- -CCAGa---CGUGGuGuUGGUGGGuGGGuG- -5'
3592 5' -56.7 NC_001650.1 + 131614 0.68 0.834955
Target:  5'- uGGgcgcagCUGCugCugG-CCACCCgGCCCGa -3'
miRNA:   3'- -CCa-----GACGugGugUuGGUGGG-UGGGUg -5'
3592 5' -56.7 NC_001650.1 + 131559 0.67 0.880383
Target:  5'- aGUCccguacaggGCcCC-CGGCCggGCCCACCCGCg -3'
miRNA:   3'- cCAGa--------CGuGGuGUUGG--UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 130472 0.68 0.809742
Target:  5'- uGGUCUGgCugCACAggACCuucaagGCCCugCUGCc -3'
miRNA:   3'- -CCAGAC-GugGUGU--UGG------UGGGugGGUG- -5'
3592 5' -56.7 NC_001650.1 + 130175 0.69 0.773975
Target:  5'- gGGcCcGCGCCACGGgCGCCUccaggggcguGCCCGCc -3'
miRNA:   3'- -CCaGaCGUGGUGUUgGUGGG----------UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 127965 0.66 0.893868
Target:  5'- aGGUgcCUGCccGCCAUcuaCACCCagACCCGCg -3'
miRNA:   3'- -CCA--GACG--UGGUGuugGUGGG--UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 124505 0.67 0.880383
Target:  5'- cGUC--CGCCGCGGCCucguCCCugCCAUu -3'
miRNA:   3'- cCAGacGUGGUGUUGGu---GGGugGGUG- -5'
3592 5' -56.7 NC_001650.1 + 122408 0.67 0.858561
Target:  5'- ----cGCGCUACAACUACCUGUCCGCc -3'
miRNA:   3'- ccagaCGUGGUGUUGGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 122199 0.67 0.850883
Target:  5'- ----aGCAUCACGuGCCGCCUgACCCGCc -3'
miRNA:   3'- ccagaCGUGGUGU-UGGUGGG-UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 121492 0.66 0.899015
Target:  5'- --cCUGCGCCgcuGCAGCCccaccagcaucuCCCACCgGCu -3'
miRNA:   3'- ccaGACGUGG---UGUUGGu-----------GGGUGGgUG- -5'
3592 5' -56.7 NC_001650.1 + 121275 0.66 0.906466
Target:  5'- cGGcCUGCuCCaACAagaGCCACCUgucCCCGCc -3'
miRNA:   3'- -CCaGACGuGG-UGU---UGGUGGGu--GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 120046 0.74 0.474281
Target:  5'- gGGUCUGCgggcugggcgcggacGCCGC-GCC-CCaCACCCACa -3'
miRNA:   3'- -CCAGACG---------------UGGUGuUGGuGG-GUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 119824 0.66 0.918153
Target:  5'- gGGUgUGgGgCGCGGCguccgCGCCCAgCCCGCa -3'
miRNA:   3'- -CCAgACgUgGUGUUG-----GUGGGU-GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 119525 0.68 0.82672
Target:  5'- cGGUCUGCAUgCugGGCUACUCcUCCAg -3'
miRNA:   3'- -CCAGACGUG-GugUUGGUGGGuGGGUg -5'
3592 5' -56.7 NC_001650.1 + 119473 0.66 0.90028
Target:  5'- --cUUGCACUuucGCAGCUACUCucuGCCCACc -3'
miRNA:   3'- ccaGACGUGG---UGUUGGUGGG---UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 118733 0.72 0.596718
Target:  5'- -aUCUGCAgCGCGcucucguacACCGCCC-CCCGCc -3'
miRNA:   3'- ccAGACGUgGUGU---------UGGUGGGuGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.