miRNA display CGI


Results 81 - 100 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3592 5' -56.7 NC_001650.1 + 118264 0.66 0.912424
Target:  5'- ---gUGCGCCACGGgcuguacucguCCAgCCUGCCCGCc -3'
miRNA:   3'- ccagACGUGGUGUU-----------GGU-GGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 117018 0.66 0.914743
Target:  5'- uGGcUCUGguCCACAaacggggaccuggccGCCGCCCugCgGa -3'
miRNA:   3'- -CC-AGACguGGUGU---------------UGGUGGGugGgUg -5'
3592 5' -56.7 NC_001650.1 + 116252 0.66 0.90028
Target:  5'- uGGUCUugGCCuCGGaCACCCGCCCGu -3'
miRNA:   3'- -CCAGAcgUGGuGUUgGUGGGUGGGUg -5'
3592 5' -56.7 NC_001650.1 + 116086 0.7 0.706994
Target:  5'- ----aGCAgCGCGGCCGCCCucgugugcACCCACu -3'
miRNA:   3'- ccagaCGUgGUGUUGGUGGG--------UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 115344 0.67 0.866041
Target:  5'- --aCUGCACCucccuCAccuCCuggucCCCGCCCGCg -3'
miRNA:   3'- ccaGACGUGGu----GUu--GGu----GGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 112651 0.67 0.863818
Target:  5'- --aUUGCcCCACcuGACCACCCaugaccccccaacaACCCACu -3'
miRNA:   3'- ccaGACGuGGUG--UUGGUGGG--------------UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 111304 0.71 0.687171
Target:  5'- ---gUGCccGCCGCAGCCuuGCCCACCCu- -3'
miRNA:   3'- ccagACG--UGGUGUUGG--UGGGUGGGug -5'
3592 5' -56.7 NC_001650.1 + 111272 0.67 0.866041
Target:  5'- gGGcCUcGC-CCGCAGCaguGCCCGCCC-Ca -3'
miRNA:   3'- -CCaGA-CGuGGUGUUGg--UGGGUGGGuG- -5'
3592 5' -56.7 NC_001650.1 + 111125 0.67 0.850883
Target:  5'- cGG-CUGUGCCGgGGCCugCuCGCCCc- -3'
miRNA:   3'- -CCaGACGUGGUgUUGGugG-GUGGGug -5'
3592 5' -56.7 NC_001650.1 + 110916 0.71 0.647062
Target:  5'- --gCUGCugCgGCAGCCugGCCUGCCCGCu -3'
miRNA:   3'- ccaGACGugG-UGUUGG--UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 109669 0.73 0.55685
Target:  5'- uGGUCUGCcagACCcagcaGCAGCUGCCCAgguCCUACg -3'
miRNA:   3'- -CCAGACG---UGG-----UGUUGGUGGGU---GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 109045 0.67 0.887235
Target:  5'- uGGgCaGCugCACGGCCcgcuCCCACgCGCg -3'
miRNA:   3'- -CCaGaCGugGUGUUGGu---GGGUGgGUG- -5'
3592 5' -56.7 NC_001650.1 + 108843 0.68 0.843012
Target:  5'- ----cGgGCCguGCAGCUGCCCACCCAg -3'
miRNA:   3'- ccagaCgUGG--UGUUGGUGGGUGGGUg -5'
3592 5' -56.7 NC_001650.1 + 108806 0.67 0.850883
Target:  5'- aGGccCUGCAcgucCCugGACUgGCCCGCCCAg -3'
miRNA:   3'- -CCa-GACGU----GGugUUGG-UGGGUGGGUg -5'
3592 5' -56.7 NC_001650.1 + 106803 0.69 0.763772
Target:  5'- ----cGCACCuuaagacgccgggACGGCCACCCGCuCCAUg -3'
miRNA:   3'- ccagaCGUGG-------------UGUUGGUGGGUG-GGUG- -5'
3592 5' -56.7 NC_001650.1 + 106039 0.66 0.918153
Target:  5'- aGG-CgaGCACCACggUCACCauagACUCGCg -3'
miRNA:   3'- -CCaGa-CGUGGUGuuGGUGGg---UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 104944 0.71 0.67719
Target:  5'- gGGUCaGCACCACAucgUCGUCC-CCCACa -3'
miRNA:   3'- -CCAGaCGUGGUGUu--GGUGGGuGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 102091 0.76 0.399979
Target:  5'- cGUCUGgAUgGCGaaGCCGCCCGCCUGCa -3'
miRNA:   3'- cCAGACgUGgUGU--UGGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 100571 0.66 0.906466
Target:  5'- cGUC-GCACCcgcCGGCCGCgucccUCACCCGCc -3'
miRNA:   3'- cCAGaCGUGGu--GUUGGUG-----GGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 98102 0.68 0.843012
Target:  5'- -cUCUGUcccucccucGCCGCAACCACaCCcCCCGu -3'
miRNA:   3'- ccAGACG---------UGGUGUUGGUG-GGuGGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.