miRNA display CGI


Results 41 - 60 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3592 5' -56.7 NC_001650.1 + 45010 0.68 0.809742
Target:  5'- aGGUCUGCugggugcccACCACGGa-ACCCAUCCu- -3'
miRNA:   3'- -CCAGACG---------UGGUGUUggUGGGUGGGug -5'
3592 5' -56.7 NC_001650.1 + 21746 0.71 0.687171
Target:  5'- gGGUC--CACCGCAGCCgcgGCCCuCCCAg -3'
miRNA:   3'- -CCAGacGUGGUGUUGG---UGGGuGGGUg -5'
3592 5' -56.7 NC_001650.1 + 142925 0.8 0.238133
Target:  5'- uGGUCUcggccGCGCCGCcgccGCCGCCCGCUCGCc -3'
miRNA:   3'- -CCAGA-----CGUGGUGu---UGGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 29268 0.68 0.801014
Target:  5'- aGGUaCUcCcCCACGucgGCCACCC-CCCGCg -3'
miRNA:   3'- -CCA-GAcGuGGUGU---UGGUGGGuGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 15804 1.1 0.002439
Target:  5'- gGGUCUGCACCACAACCACCCACCCACc -3'
miRNA:   3'- -CCAGACGUGGUGUUGGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 134152 0.67 0.873317
Target:  5'- ----gGCACUGCGGCCGCCUGCCgGg -3'
miRNA:   3'- ccagaCGUGGUGUUGGUGGGUGGgUg -5'
3592 5' -56.7 NC_001650.1 + 96323 0.76 0.399979
Target:  5'- aGGaCUGCACCcaguGCAACCcCCCuuCCCACg -3'
miRNA:   3'- -CCaGACGUGG----UGUUGGuGGGu-GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 15525 0.67 0.866041
Target:  5'- -cUCUGCcCCccguGCAGCCGCCCcucUCCACc -3'
miRNA:   3'- ccAGACGuGG----UGUUGGUGGGu--GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 112651 0.67 0.863818
Target:  5'- --aUUGCcCCACcuGACCACCCaugaccccccaacaACCCACu -3'
miRNA:   3'- ccaGACGuGGUG--UUGGUGGG--------------UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 108806 0.67 0.850883
Target:  5'- aGGccCUGCAcgucCCugGACUgGCCCGCCCAg -3'
miRNA:   3'- -CCa-GACGU----GGugUUGG-UGGGUGGGUg -5'
3592 5' -56.7 NC_001650.1 + 48170 0.68 0.82672
Target:  5'- uGGUCaucaGCCACAgcgcgaugGCCACgCACCCAg -3'
miRNA:   3'- -CCAGacg-UGGUGU--------UGGUGgGUGGGUg -5'
3592 5' -56.7 NC_001650.1 + 119525 0.68 0.82672
Target:  5'- cGGUCUGCAUgCugGGCUACUCcUCCAg -3'
miRNA:   3'- -CCAGACGUG-GugUUGGUGGGuGGGUg -5'
3592 5' -56.7 NC_001650.1 + 23522 0.68 0.809742
Target:  5'- --aCUGCugCGCGACCcuGCCCGaggcgcaccugUCCACg -3'
miRNA:   3'- ccaGACGugGUGUUGG--UGGGU-----------GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 165016 0.69 0.783122
Target:  5'- gGGUCUGC-UCGCGGCCGCCgGCg--- -3'
miRNA:   3'- -CCAGACGuGGUGUUGGUGGgUGggug -5'
3592 5' -56.7 NC_001650.1 + 35520 0.69 0.764705
Target:  5'- aGGUCaGgGCCACAGgCgugugGCCCugGCCCGCg -3'
miRNA:   3'- -CCAGaCgUGGUGUUgG-----UGGG--UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 91828 0.7 0.716818
Target:  5'- aGGUCaGCAUCACcuCCAgCCUGCUCACc -3'
miRNA:   3'- -CCAGaCGUGGUGuuGGU-GGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 145951 0.7 0.697109
Target:  5'- cGGacCUGCccGCCAUGgcccuGCCGCCCugCCACc -3'
miRNA:   3'- -CCa-GACG--UGGUGU-----UGGUGGGugGGUG- -5'
3592 5' -56.7 NC_001650.1 + 72931 0.71 0.636985
Target:  5'- cGUCUGCcccaccagcuugGCCcucucgugggugGCGACCGCCUGCCCAg -3'
miRNA:   3'- cCAGACG------------UGG------------UGUUGGUGGGUGGGUg -5'
3592 5' -56.7 NC_001650.1 + 158063 0.72 0.586697
Target:  5'- uGGUgUGCACCucCAcccugGCCACCUGCCC-Cg -3'
miRNA:   3'- -CCAgACGUGGu-GU-----UGGUGGGUGGGuG- -5'
3592 5' -56.7 NC_001650.1 + 25673 0.75 0.440659
Target:  5'- gGGUCUGgagagcagcggcccCACCACAACCACCUugCUu- -3'
miRNA:   3'- -CCAGAC--------------GUGGUGUUGGUGGGugGGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.