miRNA display CGI


Results 61 - 80 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3592 5' -56.7 NC_001650.1 + 23522 0.68 0.809742
Target:  5'- --aCUGCugCGCGACCcuGCCCGaggcgcaccugUCCACg -3'
miRNA:   3'- ccaGACGugGUGUUGG--UGGGU-----------GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 97103 0.68 0.82672
Target:  5'- uGGUCcugGCugUGCGA--GCCCACCCAg -3'
miRNA:   3'- -CCAGa--CGugGUGUUggUGGGUGGGUg -5'
3592 5' -56.7 NC_001650.1 + 102091 0.76 0.399979
Target:  5'- cGUCUGgAUgGCGaaGCCGCCCGCCUGCa -3'
miRNA:   3'- cCAGACgUGgUGU--UGGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 120046 0.74 0.474281
Target:  5'- gGGUCUGCgggcugggcgcggacGCCGC-GCC-CCaCACCCACa -3'
miRNA:   3'- -CCAGACG---------------UGGUGuUGGuGG-GUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 80375 0.72 0.586697
Target:  5'- cGUgUGCGCUGCccGGCCGCCCucgcccuCCCACa -3'
miRNA:   3'- cCAgACGUGGUG--UUGGUGGGu------GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 110916 0.71 0.647062
Target:  5'- --gCUGCugCgGCAGCCugGCCUGCCCGCu -3'
miRNA:   3'- ccaGACGugG-UGUUGG--UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 77333 0.7 0.697109
Target:  5'- cGGg--GcCGCCGCGACCACCCAgaCCAa -3'
miRNA:   3'- -CCagaC-GUGGUGUUGGUGGGUg-GGUg -5'
3592 5' -56.7 NC_001650.1 + 52138 0.7 0.745831
Target:  5'- -uUCUGCAacuCCACAauuGCCACCUACgUGCg -3'
miRNA:   3'- ccAGACGU---GGUGU---UGGUGGGUGgGUG- -5'
3592 5' -56.7 NC_001650.1 + 78903 0.69 0.773975
Target:  5'- gGGUCUGCACaaaaAACUcUgCGCCCGCg -3'
miRNA:   3'- -CCAGACGUGgug-UUGGuGgGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 163232 0.69 0.783122
Target:  5'- cGUCUGCGCCACu-CU-CCCACCa-- -3'
miRNA:   3'- cCAGACGUGGUGuuGGuGGGUGGgug -5'
3592 5' -56.7 NC_001650.1 + 118264 0.66 0.912424
Target:  5'- ---gUGCGCCACGGgcuguacucguCCAgCCUGCCCGCc -3'
miRNA:   3'- ccagACGUGGUGUU-----------GGU-GGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 77451 0.66 0.906466
Target:  5'- uGGUCUcGUGCCccuGCuACCGccuacacaucCCCACCUACa -3'
miRNA:   3'- -CCAGA-CGUGG---UGuUGGU----------GGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 122199 0.67 0.850883
Target:  5'- ----aGCAUCACGuGCCGCCUgACCCGCc -3'
miRNA:   3'- ccagaCGUGGUGU-UGGUGGG-UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 57545 0.67 0.857802
Target:  5'- aGG-CgGCGCCACAggcggguggggguGCCACCgGCgCUACg -3'
miRNA:   3'- -CCaGaCGUGGUGU-------------UGGUGGgUG-GGUG- -5'
3592 5' -56.7 NC_001650.1 + 15525 0.67 0.866041
Target:  5'- -cUCUGCcCCccguGCAGCCGCCCcucUCCACc -3'
miRNA:   3'- ccAGACGuGG----UGUUGGUGGGu--GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 134152 0.67 0.873317
Target:  5'- ----gGCACUGCGGCCGCCUGCCgGg -3'
miRNA:   3'- ccagaCGUGGUGUUGGUGGGUGGgUg -5'
3592 5' -56.7 NC_001650.1 + 131559 0.67 0.880383
Target:  5'- aGUCccguacaggGCcCC-CGGCCggGCCCACCCGCg -3'
miRNA:   3'- cCAGa--------CGuGGuGUUGG--UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 124505 0.67 0.880383
Target:  5'- cGUC--CGCCGCGGCCucguCCCugCCAUu -3'
miRNA:   3'- cCAGacGUGGUGUUGGu---GGGugGGUG- -5'
3592 5' -56.7 NC_001650.1 + 88020 0.66 0.893868
Target:  5'- gGGUgCUgGCucuCUGCcAUCACUCACCCACa -3'
miRNA:   3'- -CCA-GA-CGu--GGUGuUGGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 36551 0.66 0.90028
Target:  5'- uGUCUauggGCACCACcccGGCCACCUugaccuuggACaCCGCg -3'
miRNA:   3'- cCAGA----CGUGGUG---UUGGUGGG---------UG-GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.