miRNA display CGI


Results 81 - 100 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3592 5' -56.7 NC_001650.1 + 110916 0.71 0.647062
Target:  5'- --gCUGCugCgGCAGCCugGCCUGCCCGCu -3'
miRNA:   3'- ccaGACGugG-UGUUGG--UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 159204 0.75 0.461404
Target:  5'- cGUCUGUugcauCCACuuCCACuCCAUCCACa -3'
miRNA:   3'- cCAGACGu----GGUGuuGGUG-GGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 93549 0.69 0.755321
Target:  5'- uGGUCUGCGuggggucgcCCACGcagacggacGCCAuacagUCCACCUACa -3'
miRNA:   3'- -CCAGACGU---------GGUGU---------UGGU-----GGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 51109 0.69 0.755321
Target:  5'- uGGUgCUGgGCCGaGGCCAccgucCCCAUCCACu -3'
miRNA:   3'- -CCA-GACgUGGUgUUGGU-----GGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 106803 0.69 0.763772
Target:  5'- ----cGCACCuuaagacgccgggACGGCCACCCGCuCCAUg -3'
miRNA:   3'- ccagaCGUGG-------------UGUUGGUGGGUG-GGUG- -5'
3592 5' -56.7 NC_001650.1 + 148608 0.69 0.764705
Target:  5'- -cUCUGCACCccccACCACCCuccCCCAg -3'
miRNA:   3'- ccAGACGUGGugu-UGGUGGGu--GGGUg -5'
3592 5' -56.7 NC_001650.1 + 15845 0.73 0.537194
Target:  5'- aGGUUgugGcCACC-CAcCCACCUACCCACc -3'
miRNA:   3'- -CCAGa--C-GUGGuGUuGGUGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 77124 0.69 0.764705
Target:  5'- uGGUCUGgGuggUCGCGGCgGCCCcgucGCCCAUg -3'
miRNA:   3'- -CCAGACgU---GGUGUUGgUGGG----UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 167555 0.72 0.626906
Target:  5'- gGGUCUGCcugGCaACAGCCuaccucACUCACCCAUa -3'
miRNA:   3'- -CCAGACG---UGgUGUUGG------UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 848 0.72 0.626906
Target:  5'- gGGUCUGCcugGCaACAGCCuaccucACUCACCCAUa -3'
miRNA:   3'- -CCAGACG---UGgUGUUGG------UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 93228 0.72 0.606765
Target:  5'- ----cGCGCCACGGCCgaaACgCGCCCGCg -3'
miRNA:   3'- ccagaCGUGGUGUUGG---UGgGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 50811 0.72 0.586697
Target:  5'- aGGUCUucuucucggGCACCGCGGCC-CCgGCgCGCg -3'
miRNA:   3'- -CCAGA---------CGUGGUGUUGGuGGgUGgGUG- -5'
3592 5' -56.7 NC_001650.1 + 82554 0.68 0.801014
Target:  5'- --gCUGCccaACUACAugUACCgGCCCGCc -3'
miRNA:   3'- ccaGACG---UGGUGUugGUGGgUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 57301 0.69 0.780392
Target:  5'- -cUCUGCuCCACAuuagcggccguagcGCCGguggcaccCCCACCCGCc -3'
miRNA:   3'- ccAGACGuGGUGU--------------UGGU--------GGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 118733 0.72 0.596718
Target:  5'- -aUCUGCAgCGCGcucucguacACCGCCC-CCCGCc -3'
miRNA:   3'- ccAGACGUgGUGU---------UGGUGGGuGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 164384 0.69 0.773975
Target:  5'- uGGUCcGCGCUGCAGa-ACUCGCCCAg -3'
miRNA:   3'- -CCAGaCGUGGUGUUggUGGGUGGGUg -5'
3592 5' -56.7 NC_001650.1 + 136515 0.69 0.773975
Target:  5'- aGGUC-GcCGCCGCcACCGCCCcCaCCGCc -3'
miRNA:   3'- -CCAGaC-GUGGUGuUGGUGGGuG-GGUG- -5'
3592 5' -56.7 NC_001650.1 + 182696 0.69 0.773975
Target:  5'- --cCUG-GCUACAuGCCuACCCGCCCACa -3'
miRNA:   3'- ccaGACgUGGUGU-UGG-UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 15989 0.69 0.773975
Target:  5'- --cCUG-GCUACAuGCCuACCCGCCCACa -3'
miRNA:   3'- ccaGACgUGGUGU-UGG-UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 157583 0.69 0.771207
Target:  5'- aGGUacaGCACCGC-GCCGCCCcugggcaacagagaACCCAg -3'
miRNA:   3'- -CCAga-CGUGGUGuUGGUGGG--------------UGGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.