Results 101 - 120 of 203 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 51109 | 0.69 | 0.755321 |
Target: 5'- uGGUgCUGgGCCGaGGCCAccgucCCCAUCCACu -3' miRNA: 3'- -CCA-GACgUGGUgUUGGU-----GGGUGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 57301 | 0.69 | 0.780392 |
Target: 5'- -cUCUGCuCCACAuuagcggccguagcGCCGguggcaccCCCACCCGCc -3' miRNA: 3'- ccAGACGuGGUGU--------------UGGU--------GGGUGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 82554 | 0.68 | 0.801014 |
Target: 5'- --gCUGCccaACUACAugUACCgGCCCGCc -3' miRNA: 3'- ccaGACG---UGGUGUugGUGGgUGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 77124 | 0.69 | 0.764705 |
Target: 5'- uGGUCUGgGuggUCGCGGCgGCCCcgucGCCCAUg -3' miRNA: 3'- -CCAGACgU---GGUGUUGgUGGG----UGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 155767 | 0.73 | 0.576708 |
Target: 5'- cGGgcagGCACagCACGGCCGCCCccACCCGCc -3' miRNA: 3'- -CCaga-CGUG--GUGUUGGUGGG--UGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 50811 | 0.72 | 0.586697 |
Target: 5'- aGGUCUucuucucggGCACCGCGGCC-CCgGCgCGCg -3' miRNA: 3'- -CCAGA---------CGUGGUGUUGGuGGgUGgGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 164384 | 0.69 | 0.773975 |
Target: 5'- uGGUCcGCGCUGCAGa-ACUCGCCCAg -3' miRNA: 3'- -CCAGaCGUGGUGUUggUGGGUGGGUg -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 93228 | 0.72 | 0.606765 |
Target: 5'- ----cGCGCCACGGCCgaaACgCGCCCGCg -3' miRNA: 3'- ccagaCGUGGUGUUGG---UGgGUGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 848 | 0.72 | 0.626906 |
Target: 5'- gGGUCUGCcugGCaACAGCCuaccucACUCACCCAUa -3' miRNA: 3'- -CCAGACG---UGgUGUUGG------UGGGUGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 136515 | 0.69 | 0.773975 |
Target: 5'- aGGUC-GcCGCCGCcACCGCCCcCaCCGCc -3' miRNA: 3'- -CCAGaC-GUGGUGuUGGUGGGuG-GGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 182696 | 0.69 | 0.773975 |
Target: 5'- --cCUG-GCUACAuGCCuACCCGCCCACa -3' miRNA: 3'- ccaGACgUGGUGU-UGG-UGGGUGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 15989 | 0.69 | 0.773975 |
Target: 5'- --cCUG-GCUACAuGCCuACCCGCCCACa -3' miRNA: 3'- ccaGACgUGGUGU-UGG-UGGGUGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 159204 | 0.75 | 0.461404 |
Target: 5'- cGUCUGUugcauCCACuuCCACuCCAUCCACa -3' miRNA: 3'- cCAGACGu----GGUGuuGGUG-GGUGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 93549 | 0.69 | 0.755321 |
Target: 5'- uGGUCUGCGuggggucgcCCACGcagacggacGCCAuacagUCCACCUACa -3' miRNA: 3'- -CCAGACGU---------GGUGU---------UGGU-----GGGUGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 106803 | 0.69 | 0.763772 |
Target: 5'- ----cGCACCuuaagacgccgggACGGCCACCCGCuCCAUg -3' miRNA: 3'- ccagaCGUGG-------------UGUUGGUGGGUG-GGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 148608 | 0.69 | 0.764705 |
Target: 5'- -cUCUGCACCccccACCACCCuccCCCAg -3' miRNA: 3'- ccAGACGUGGugu-UGGUGGGu--GGGUg -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 118733 | 0.72 | 0.596718 |
Target: 5'- -aUCUGCAgCGCGcucucguacACCGCCC-CCCGCc -3' miRNA: 3'- ccAGACGUgGUGU---------UGGUGGGuGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 169277 | 0.73 | 0.527456 |
Target: 5'- -aUCUGCcCgGCAACCGCCUACCuCAUa -3' miRNA: 3'- ccAGACGuGgUGUUGGUGGGUGG-GUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 182552 | 0.73 | 0.537194 |
Target: 5'- aGGUUgugGcCACC-CAcCCACCUACCCACc -3' miRNA: 3'- -CCAGa--C-GUGGuGUuGGUGGGUGGGUG- -5' |
|||||||
3592 | 5' | -56.7 | NC_001650.1 | + | 157583 | 0.69 | 0.771207 |
Target: 5'- aGGUacaGCACCGC-GCCGCCCcugggcaacagagaACCCAg -3' miRNA: 3'- -CCAga-CGUGGUGuUGGUGGG--------------UGGGUg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home