miRNA display CGI


Results 121 - 140 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3592 5' -56.7 NC_001650.1 + 93549 0.69 0.755321
Target:  5'- uGGUCUGCGuggggucgcCCACGcagacggacGCCAuacagUCCACCUACa -3'
miRNA:   3'- -CCAGACGU---------GGUGU---------UGGU-----GGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 51109 0.69 0.755321
Target:  5'- uGGUgCUGgGCCGaGGCCAccgucCCCAUCCACu -3'
miRNA:   3'- -CCA-GACgUGGUgUUGGU-----GGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 848 0.72 0.626906
Target:  5'- gGGUCUGCcugGCaACAGCCuaccucACUCACCCAUa -3'
miRNA:   3'- -CCAGACG---UGgUGUUGG------UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 93228 0.72 0.606765
Target:  5'- ----cGCGCCACGGCCgaaACgCGCCCGCg -3'
miRNA:   3'- ccagaCGUGGUGUUGG---UGgGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 118733 0.72 0.596718
Target:  5'- -aUCUGCAgCGCGcucucguacACCGCCC-CCCGCc -3'
miRNA:   3'- ccAGACGUgGUGU---------UGGUGGGuGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 8007 0.66 0.905857
Target:  5'- uGGUCUGCcUgGCAACCAgagagacCCCACUgGg -3'
miRNA:   3'- -CCAGACGuGgUGUUGGU-------GGGUGGgUg -5'
3592 5' -56.7 NC_001650.1 + 76427 0.66 0.90028
Target:  5'- ---gUGCGCCAUGACCACcgCCACCa-- -3'
miRNA:   3'- ccagACGUGGUGUUGGUG--GGUGGgug -5'
3592 5' -56.7 NC_001650.1 + 33975 0.66 0.90028
Target:  5'- uGUCaGUACCcuCAACCugacugacauACCCACCCuACa -3'
miRNA:   3'- cCAGaCGUGGu-GUUGG----------UGGGUGGG-UG- -5'
3592 5' -56.7 NC_001650.1 + 159842 0.66 0.90028
Target:  5'- gGGUCUGgGaCCACugAACCGCUUgaaGCCCGg -3'
miRNA:   3'- -CCAGACgU-GGUG--UUGGUGGG---UGGGUg -5'
3592 5' -56.7 NC_001650.1 + 116252 0.66 0.90028
Target:  5'- uGGUCUugGCCuCGGaCACCCGCCCGu -3'
miRNA:   3'- -CCAGAcgUGGuGUUgGUGGGUGGGUg -5'
3592 5' -56.7 NC_001650.1 + 71335 0.66 0.90028
Target:  5'- --cCUGCGCCcuCAggucccucuGCCACCCAaaggUCCACa -3'
miRNA:   3'- ccaGACGUGGu-GU---------UGGUGGGU----GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 135608 0.66 0.90028
Target:  5'- cGG-CgcaCACCACAGCUAgCCuggcGCCCGCg -3'
miRNA:   3'- -CCaGac-GUGGUGUUGGUgGG----UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 121492 0.66 0.899015
Target:  5'- --cCUGCGCCgcuGCAGCCccaccagcaucuCCCACCgGCu -3'
miRNA:   3'- ccaGACGUGG---UGUUGGu-----------GGGUGGgUG- -5'
3592 5' -56.7 NC_001650.1 + 136150 0.66 0.893868
Target:  5'- uGGcCaUGCGCCugAAggCGCCC-CCCGCg -3'
miRNA:   3'- -CCaG-ACGUGGugUUg-GUGGGuGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 127965 0.66 0.893868
Target:  5'- aGGUgcCUGCccGCCAUcuaCACCCagACCCGCg -3'
miRNA:   3'- -CCA--GACG--UGGUGuugGUGGG--UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 147988 0.67 0.887235
Target:  5'- --cCUGCGCU-CggUCGCCCGCCCc- -3'
miRNA:   3'- ccaGACGUGGuGuuGGUGGGUGGGug -5'
3592 5' -56.7 NC_001650.1 + 182959 0.73 0.575711
Target:  5'- uGGcCUGC-CCACuGACCucaugugGCCCGCCCAUu -3'
miRNA:   3'- -CCaGACGuGGUG-UUGG-------UGGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 106803 0.69 0.763772
Target:  5'- ----cGCACCuuaagacgccgggACGGCCACCCGCuCCAUg -3'
miRNA:   3'- ccagaCGUGG-------------UGUUGGUGGGUG-GGUG- -5'
3592 5' -56.7 NC_001650.1 + 27761 0.73 0.576708
Target:  5'- cGUggGCACCGCGGCCAacaCGCCCAUg -3'
miRNA:   3'- cCAgaCGUGGUGUUGGUgg-GUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 155767 0.73 0.576708
Target:  5'- cGGgcagGCACagCACGGCCGCCCccACCCGCc -3'
miRNA:   3'- -CCaga-CGUG--GUGUUGGUGGG--UGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.