Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3594 | 3' | -50.9 | NC_001650.1 | + | 105530 | 0.68 | 0.980003 |
Target: 5'- uGGGUGAacccCUAGA-GCCCCCcUACu -3' miRNA: 3'- uCCCACUaua-GGUUUaCGGGGGaAUG- -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 181627 | 0.68 | 0.977653 |
Target: 5'- gGGGGUGcuGUGUaaccgCAGA-GCCCCCggGCg -3' miRNA: 3'- -UCCCAC--UAUAg----GUUUaCGGGGGaaUG- -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 163390 | 0.68 | 0.975107 |
Target: 5'- aAGGGUaGAcaccgCCAccGAUGCCCCCg--- -3' miRNA: 3'- -UCCCA-CUaua--GGU--UUACGGGGGaaug -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 114838 | 0.68 | 0.972354 |
Target: 5'- gAGGGgGAUGUCCAAacccaagagGUGUCCUCggugGCc -3' miRNA: 3'- -UCCCaCUAUAGGUU---------UACGGGGGaa--UG- -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 87036 | 0.69 | 0.959146 |
Target: 5'- cGGGUGcaucuUCCugcuGGUGCCCCUgugGCg -3' miRNA: 3'- uCCCACuau--AGGu---UUACGGGGGaa-UG- -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 100736 | 0.69 | 0.954457 |
Target: 5'- aGGGGUGGUgccggggGUCCGucacggaGAUGCCCUUgUACu -3' miRNA: 3'- -UCCCACUA-------UAGGU-------UUACGGGGGaAUG- -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 76448 | 0.7 | 0.942139 |
Target: 5'- cAGGGUGucGUCCGA--GCCgCCCUUGu -3' miRNA: 3'- -UCCCACuaUAGGUUuaCGG-GGGAAUg -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 49660 | 0.72 | 0.889076 |
Target: 5'- gGGGGUGGg--CCu--UGCCCCUcUACg -3' miRNA: 3'- -UCCCACUauaGGuuuACGGGGGaAUG- -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 174553 | 0.72 | 0.889076 |
Target: 5'- uGGGUGcAUGgcCCGAccGCCCCCUaUGCa -3' miRNA: 3'- uCCCAC-UAUa-GGUUuaCGGGGGA-AUG- -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 7846 | 0.72 | 0.889076 |
Target: 5'- uGGGUGcAUGgcCCGAccGCCCCCUaUGCa -3' miRNA: 3'- uCCCAC-UAUa-GGUUuaCGGGGGA-AUG- -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 63081 | 0.72 | 0.881929 |
Target: 5'- cGGGUGc--UCCGGA-GCCCCCUgGCc -3' miRNA: 3'- uCCCACuauAGGUUUaCGGGGGAaUG- -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 8134 | 0.73 | 0.842744 |
Target: 5'- uGGGG-GAUGUCCAcuaGCCCCUcUGCc -3' miRNA: 3'- -UCCCaCUAUAGGUuuaCGGGGGaAUG- -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 174841 | 0.73 | 0.842744 |
Target: 5'- uGGGG-GAUGUCCAcuaGCCCCUcUGCc -3' miRNA: 3'- -UCCCaCUAUAGGUuuaCGGGGGaAUG- -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 128610 | 0.75 | 0.74011 |
Target: 5'- -aGGUGGUGUCCAuGUGCCCCg---- -3' miRNA: 3'- ucCCACUAUAGGUuUACGGGGgaaug -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 89325 | 0.75 | 0.729973 |
Target: 5'- cGGGUGGUGUagcaGGAUGCCCCCcgguggGCg -3' miRNA: 3'- uCCCACUAUAgg--UUUACGGGGGaa----UG- -5' |
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3594 | 3' | -50.9 | NC_001650.1 | + | 18944 | 1.11 | 0.006701 |
Target: 5'- gAGGGUGAUAUCCAAAUGCCCCCUUACa -3' miRNA: 3'- -UCCCACUAUAGGUUUACGGGGGAAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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