miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3595 5' -60.1 NC_001650.1 + 73641 0.66 0.734727
Target:  5'- --cUGGCgucGGGCCcguuGUGCUGGCCcugGGCc -3'
miRNA:   3'- cuuACCGgc-UCCGG----CACGACCGG---UCG- -5'
3595 5' -60.1 NC_001650.1 + 48173 0.66 0.734727
Target:  5'- cGGUGGUgGGGaGCC-UGCUGGUgaUAGCg -3'
miRNA:   3'- cUUACCGgCUC-CGGcACGACCG--GUCG- -5'
3595 5' -60.1 NC_001650.1 + 73133 0.67 0.725182
Target:  5'- uGAUGGUgGgGGGCaCGuUGaaGGCCAGCa -3'
miRNA:   3'- cUUACCGgC-UCCG-GC-ACgaCCGGUCG- -5'
3595 5' -60.1 NC_001650.1 + 70841 0.67 0.725182
Target:  5'- ----aGCUGcuGGCCaUGCUGGCCAGa -3'
miRNA:   3'- cuuacCGGCu-CCGGcACGACCGGUCg -5'
3595 5' -60.1 NC_001650.1 + 132596 0.67 0.715561
Target:  5'- ---cGGCC-AGGCCGUcaaagaGCUcGGCCgagGGCg -3'
miRNA:   3'- cuuaCCGGcUCCGGCA------CGA-CCGG---UCG- -5'
3595 5' -60.1 NC_001650.1 + 77796 0.67 0.715561
Target:  5'- ---aGGCCGcuGCCGgagcUGCUGGaCGGCc -3'
miRNA:   3'- cuuaCCGGCucCGGC----ACGACCgGUCG- -5'
3595 5' -60.1 NC_001650.1 + 82628 0.67 0.711694
Target:  5'- ---cGGCCGuccccugccaguuGGCgG-GCuUGGCCAGCu -3'
miRNA:   3'- cuuaCCGGCu------------CCGgCaCG-ACCGGUCG- -5'
3595 5' -60.1 NC_001650.1 + 108880 0.67 0.705874
Target:  5'- ---cGGCCagguccagcAGGCCGUGCaGGUCGGg -3'
miRNA:   3'- cuuaCCGGc--------UCCGGCACGaCCGGUCg -5'
3595 5' -60.1 NC_001650.1 + 91852 0.67 0.705874
Target:  5'- ---gGGCCGAggacaagaGGCUGgGCgaGGUCAGCa -3'
miRNA:   3'- cuuaCCGGCU--------CCGGCaCGa-CCGGUCG- -5'
3595 5' -60.1 NC_001650.1 + 57410 0.67 0.69515
Target:  5'- ----aGCCGcagcagcAGGCCuuuGUGgaGGCCAGCa -3'
miRNA:   3'- cuuacCGGC-------UCCGG---CACgaCCGGUCG- -5'
3595 5' -60.1 NC_001650.1 + 87890 0.67 0.69515
Target:  5'- ---cGGCUGuGGCUGUuuaaauaGCUGGUCGGg -3'
miRNA:   3'- cuuaCCGGCuCCGGCA-------CGACCGGUCg -5'
3595 5' -60.1 NC_001650.1 + 27769 0.67 0.693194
Target:  5'- ---aGGCCGuucuccuuuuggguGGGCuCGgcagGCaGGCCAGCc -3'
miRNA:   3'- cuuaCCGGC--------------UCCG-GCa---CGaCCGGUCG- -5'
3595 5' -60.1 NC_001650.1 + 75054 0.67 0.676492
Target:  5'- uGAUGGCCGGcaggagccuGGCCaGggaGUUGGgCAGCa -3'
miRNA:   3'- cUUACCGGCU---------CCGG-Ca--CGACCgGUCG- -5'
3595 5' -60.1 NC_001650.1 + 145497 0.68 0.666619
Target:  5'- ---gGGCCGGGGgCuc-CUGGUCAGCu -3'
miRNA:   3'- cuuaCCGGCUCCgGcacGACCGGUCG- -5'
3595 5' -60.1 NC_001650.1 + 79070 0.68 0.666619
Target:  5'- ---cGGCCGAGGCguCGgGCcccgGGCCuGGCu -3'
miRNA:   3'- cuuaCCGGCUCCG--GCaCGa---CCGG-UCG- -5'
3595 5' -60.1 NC_001650.1 + 111657 0.68 0.65672
Target:  5'- aAGUGGCa-GGGCgG-GCUGGCCucGCg -3'
miRNA:   3'- cUUACCGgcUCCGgCaCGACCGGu-CG- -5'
3595 5' -60.1 NC_001650.1 + 38133 0.68 0.65672
Target:  5'- ---cGGCCGGGGggaugUUGUGCUgGGCC-GCg -3'
miRNA:   3'- cuuaCCGGCUCC-----GGCACGA-CCGGuCG- -5'
3595 5' -60.1 NC_001650.1 + 142883 0.68 0.65672
Target:  5'- aAAUGGCCGccgccgccccGGcCCGUGCa-GCCGGCg -3'
miRNA:   3'- cUUACCGGCu---------CC-GGCACGacCGGUCG- -5'
3595 5' -60.1 NC_001650.1 + 143090 0.68 0.640845
Target:  5'- ---gGGCCGGGGCgGcggcggccauuucccUGUUGGCCucGCu -3'
miRNA:   3'- cuuaCCGGCUCCGgC---------------ACGACCGGu-CG- -5'
3595 5' -60.1 NC_001650.1 + 21631 0.68 0.63588
Target:  5'- cGGggGGCugaccccCGGGGCCGUGCU-GCCAcGUg -3'
miRNA:   3'- -CUuaCCG-------GCUCCGGCACGAcCGGU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.